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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:38.9 nTPM
HPA:38.9 nTPM
GTEx:37.9 nTPM
FANTOM5:76.9 Scaled Tags Per Million
Pig:33.6 nTPM
Mouse:59.6 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039169
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.9
1781 Male, age 74, unknown 36.2
2846 Female, age 79, unknown 33.3
2288 Male, age 75, left hemisphere 33.1
2481 Female, age 94, left hemisphere 33.0
1857 Female, age 85, left hemisphere 31.3
2290 Female, age 72, unknown 30.3
1854 Male, age 80, left hemisphere 29.9
2289 Male, age 61, right hemisphere 28.3
Claustrum
nTPM: 38.9
2568 Male, age 61, both hemispheres 43.1
1956 Male, age 74, unknown 43.0
2392 Female, age 94, both hemispheres 39.8
2645 Female, age 72, unknown 38.2
2284 Female, age 91, both hemispheres 37.9
2491 Male, age 75, both hemispheres 37.8
2292 Female, age 85, both hemispheres 37.5
2198 Male, age 80, both hemispheres 37.3
2196 Female, age 79, unknown 35.4
Globus pallidus, externus
nTPM: 32.2
2395 Male, age 75, both hemispheres 35.9
2772 Female, age 79, unknown 33.3
1996 Male, age 80, right hemisphere 32.5
2646 Male, age 61, right hemisphere 30.2
2567 Female, age 72, unknown 29.1
Globus pallidus, internus
nTPM: 34.3
2287 Male, age 75, right hemisphere 38.6
2778 Female, age 91, both hemispheres 37.3
2111 Female, age 85, right hemisphere 36.7
1818 Male, age 74, unknown 33.0
2483 Female, age 94, right hemisphere 32.6
2037 Male, age 80, right hemisphere 31.7
2566 Female, age 72, unknown 30.1
Nucleus accumbens
nTPM: 33.1
2391 Female, age 94, left hemisphere 35.0
2286 Male, age 75, left hemisphere 34.6
1856 Female, age 91, right hemisphere 34.5
2824 Male, age 61, right hemisphere 33.1
2698 Female, age 72, unknown 32.8
1783 Male, age 74, unknown 32.1
1806 Female, age 85, left hemisphere 31.9
2732 Male, age 80, right hemisphere 30.7
Nucleus basalis of Meynert
nTPM: 32.5
2821 Male, age 75, both hemispheres 33.8
2393 Male, age 80, right hemisphere 32.8
2484 Female, age 94, left hemisphere 32.5
2569 Male, age 61, both hemispheres 30.7
Nucleus of the diagonal band
nTPM: 36.8
1812 Female, age 91, both hemispheres 41.9
2775 Male, age 80, right hemisphere 38.1
2029 Male, age 61, right hemisphere 36.9
2195 Female, age 85, both hemispheres 35.7
1979 Male, age 74, unknown 31.1
Olfactory tubercle
nTPM: 37.0
2487 Female, age 94, left hemisphere 37.6
1846 Male, age 80, right hemisphere 37.5
2856 Male, age 75, right hemisphere 36.9
1998 Female, age 91, both hemispheres 35.8
Putamen
nTPM: 32.5
1829 Male, age 74, unknown 33.8
2482 Female, age 94, left hemisphere 33.5
2466 Female, age 79, unknown 33.4
1937 Female, age 91, right hemisphere 33.0
2647 Male, age 75, left hemisphere 33.0
1838 Male, age 80, right hemisphere 30.8
2489 Female, age 72, unknown 30.2
Septal nuclei
nTPM: 36.3
2031 Female, age 72, unknown 40.2
2394 Male, age 61, left hemisphere 38.7
1960 Male, age 74, unknown 38.6
2009 Female, age 91, both hemispheres 35.8
2629 Female, age 94, right hemisphere 34.8
2059 Female, age 85, both hemispheres 34.0
2199 Male, age 80, right hemisphere 31.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.1
Samples: 246

Max nTPM: 80.4
Min nTPM: 16.7
Std nTPM: 9.1
Median nTPM: 30.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 80.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 80.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 73.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 67.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 61.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 58.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 57.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 56.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 54.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 52.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.5
Samples: 246

Max nTPM: 98.2
Min nTPM: 19.1
Std nTPM: 10.4
Median nTPM: 33.4
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 98.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 85.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 76.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 70.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 67.8
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 66.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 65.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 62.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 58.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 56.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 56.6
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Brain - Putamen (basal ganglia)
Average nTPM: 37.9
Samples: 205

Max nTPM: 102.3
Min nTPM: 21.4
Std nTPM: 11.0
Median nTPM: 35.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 102.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 83.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 82.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 80.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 77.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 64.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 64.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 63.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 61.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 59.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 56.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.6
FF:10164-103B2 76 years, female 30.6
Globus pallidus
Scaled Tags Per Million: 41.0
FF:10175-103C4 60 years, female 45.7
FF:10161-103A8 76 years, female 36.3
Nucleus accumbens
Scaled Tags Per Million: 76.9
FF:10037-101F1 23-56 years, mixed 76.9
Putamen
Scaled Tags Per Million: 52.5
FF:10176-103C5 60 years, female 52.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.6
Pig sample Sample description nTPM
Caudate
nTPM: 18.6
Samples: 4

Max nTPM: 20.1
Min nTPM: 16.7
Sample A Female 17.6
Sample B Female 20.1
Sample C Male 19.9
Sample D Male 16.7
Putamen
nTPM: 19.9
Samples: 4

Max nTPM: 22.4
Min nTPM: 14.9
Sample A Female 21.3
Sample B Female 14.9
Sample C Male 21.1
Sample D Male 22.4
Septum
nTPM: 33.6
Samples: 4

Max nTPM: 55.1
Min nTPM: 24.7
Sample A Female 24.7
Sample B Female 26.3
Sample C Male 55.1
Sample D Male 28.4
Ventral pallidum
nTPM: 26.3
Samples: 4

Max nTPM: 37.8
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 23.4
Sample C Male 37.8
Sample D Male 25.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 52.2
Samples: 4

Max nTPM: 61.8
Min nTPM: 41.7
Sample A Male 44.3
Sample B Male 41.7
Sample C Female 61.8
Sample D Female 60.9
Septum
nTPM: 59.6
Samples: 4

Max nTPM: 69.5
Min nTPM: 50.0
Sample A Male 50.0
Sample B Male 58.3
Sample C Female 69.5
Sample D Female 60.5
Ventral forebrain
nTPM: 50.0
Samples: 4

Max nTPM: 55.0
Min nTPM: 44.6
Sample A Male 48.6
Sample B Male 44.6
Sample C Female 51.6
Sample D Female 55.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
413789 Antisense, RP_040809_01_D10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
413789 Antisense, RP_040809_01_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.