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TRAM1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA:27.9 nTPM
GTEx:31.4 nTPM
FANTOM5:111.5 Scaled Tags Per Million
Pig:32.5 nTPM
Mouse:24.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
1870 Female, age 42, unknown 31.4
1830 Male, age 51, unknown 28.7
1833 Male, age 53, unknown 28.3
2411 Female, age 72, unknown 26.1
2019 Male, age 18, unknown 25.5
2586 Male, age 75, left hemisphere 25.0
2666 Male, age 74, left hemisphere 24.7
1827 Male, age 72, unknown 24.6
2828 Female, age 72, unknown 24.5
2219 Male, age 76, both hemispheres 24.2
Dorsal raphe nucleus
nTPM: 27.7
2016 Female, age 72, unknown 29.9
2298 Female, age 72, unknown 28.1
2750 Male, age 76, both hemispheres 28.0
1828 Male, age 53, unknown 26.9
2047 Male, age 72, unknown 25.5
Inferior colliculus
nTPM: 26.2
1848 Female, age 42, unknown 26.7
2097 Female, age 72, unknown 26.5
1890 Male, age 53, unknown 25.9
2849 Male, age 72, unknown 25.7
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Pedunculopontine tegmental nucleus
nTPM: 27.2
2338 Male, age 61, both hemispheres 28.5
2334 Male, age 80, both hemispheres 27.6
1921 Female, age 85, both hemispheres 25.4
Periaquaductal grey, anterior
nTPM: 27.2
1947 Male, age 18, unknown 28.7
2502 Female, age 75, unknown 28.3
1795 Male, age 51, unknown 24.6
Periaquaductal grey, dorsal
nTPM: 27.5
2850 Male, age 76, both hemispheres 30.5
2464 Female, age 72, unknown 26.9
1831 Male, age 72, unknown 26.7
1840 Male, age 53, unknown 26.0
Periaquaductal grey, lateral
nTPM: 26.9
2272 Male, age 74, both hemispheres 27.4
2140 Male, age 76, both hemispheres 27.3
2053 Male, age 18, unknown 25.9
Pretectal area
nTPM: 25.6
2273 Male, age 74, both hemispheres 28.6
1815 Male, age 53, unknown 26.8
2224 Female, age 72, unknown 26.7
2667 Female, age 75, unknown 26.6
2825 Male, age 18, unknown 26.2
2316 Male, age 76, right hemisphere 25.4
1817 Female, age 42, unknown 25.1
2407 Male, age 75, both hemispheres 24.7
1944 Female, age 72, unknown 24.2
2007 Male, age 72, unknown 24.1
1816 Male, age 51, unknown 23.0
Red nucleus
nTPM: 27.6
1954 Female, age 42, unknown 32.2
1821 Female, age 72, unknown 31.6
1904 Male, age 53, unknown 30.4
1865 Male, age 51, unknown 29.2
2227 Male, age 72, unknown 27.9
2503 Female, age 72, unknown 27.9
2769 Male, age 72, unknown 27.8
2823 Male, age 76, right hemisphere 27.4
2785 Male, age 18, unknown 26.2
2725 Female, age 75, unknown 25.7
2584 Male, age 75, left hemisphere 24.1
2588 Male, age 74, left hemisphere 21.3
Substantia nigra
nTPM: 26.5
2241 Male, age 72, unknown 28.4
2409 Female, age 72, unknown 28.1
2699 Male, age 18, unknown 27.8
1851 Male, age 51, unknown 27.5
1889 Female, age 72, unknown 26.6
2583 Male, age 75, right hemisphere 26.3
2665 Male, age 74, both hemispheres 25.5
1916 Female, age 42, unknown 25.2
2590 Female, age 75, unknown 25.0
1941 Male, age 53, unknown 24.9
Superior colliculus
nTPM: 26.6
1913 Female, age 42, unknown 30.8
1995 Male, age 72, unknown 30.8
2668 Female, age 75, unknown 27.4
1839 Male, age 51, unknown 26.7
2587 Male, age 74, left hemisphere 26.7
2261 Male, age 18, unknown 25.9
1895 Male, age 76, right hemisphere 25.4
2087 Female, age 72, unknown 24.2
2664 Male, age 75, both hemispheres 24.2
1796 Male, age 53, unknown 23.9
Ventral tegmental area
nTPM: 26.4
2021 Male, age 53, unknown 27.2
1942 Male, age 51, unknown 26.6
2223 Female, age 72, unknown 26.4
2410 Female, age 72, unknown 26.3
2218 Male, age 76, both hemispheres 25.9
1915 Female, age 42, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.4
Samples: 139

Max nTPM: 54.1
Min nTPM: 13.3
Std nTPM: 7.7
Median nTPM: 30.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 48.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 45.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 45.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 45.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 44.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 43.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.5
FF:10158-103A5 76 years, female 111.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.5
Pig sample Sample description nTPM
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 45.5
Min nTPM: 18.1
Sample A Female 45.5
Sample B Female 28.2
Sample C Male 22.4
Sample D Male 18.1
Periaqueductal gray
nTPM: 24.2
Samples: 3

Max nTPM: 24.7
Min nTPM: 23.9
Sample B Female 23.9
Sample C Male 23.9
Sample D Male 24.7
Substantia nigra
nTPM: 30.2
Samples: 4

Max nTPM: 35.6
Min nTPM: 24.1
Sample A Female 32.3
Sample B Female 35.6
Sample C Male 24.1
Sample D Male 28.7
Superior colliculi
nTPM: 32.6
Samples: 4

Max nTPM: 44.1
Min nTPM: 24.2
Sample A Female 33.0
Sample B Female 44.1
Sample C Male 28.9
Sample D Male 24.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 25.5
Min nTPM: 22.7
Sample A Male 22.7
Sample B Male 25.5
Sample C Female 24.3
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
513019 Antisense, RP_040810_01_A10, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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