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IDH3G
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:54.9 nTPM
HPA:54.9 nTPM
GTEx:68.7 nTPM
FANTOM5:116.2 Scaled Tags Per Million
Pig:55.7 nTPM
Mouse:168.2 nTPM
Allen mouse:14.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000425Antibody HPA002017
Glial cells Not detectedMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Hippocampus
nTPM: 48.6
1898 Male, age 80, left hemisphere 53.6
2621 Female, age 67, right hemisphere 51.0
1855 Male, age 76, left hemisphere 49.4
1911 Female, age 85, right hemisphere 47.2
2529 Female, age 94, left hemisphere 47.2
2148 Female, age 91, left hemisphere 43.4
Dentate gyrus
nTPM: 48.9
1927 Female, age 91, both hemispheres 52.8
2530 Female, age 94, left hemisphere 52.3
2010 Male, age 76, both hemispheres 51.7
2528 Male, age 74, both hemispheres 46.1
2246 Female, age 85, both hemispheres 45.7
2531 Female, age 67, both hemispheres 44.9
Entorhinal gyrus
nTPM: 46.3
2764 Male, age 80, right hemisphere 49.3
2613 Female, age 94, left hemisphere 49.0
1787 Male, age 76, left hemisphere 47.3
1938 Female, age 85, left hemisphere 46.7
2117 Female, age 91, right hemisphere 43.7
2686 Male, age 75, right hemisphere 41.7
Hippocampus, CA1
nTPM: 54.9
2749 Male, age 80, left hemisphere 84.4
2527 Male, age 74, both hemispheres 48.9
1873 Female, age 85, both hemispheres 48.3
2045 Male, age 76, both hemispheres 47.7
2082 Female, age 91, right hemisphere 45.2
Hippocampus, CA2
nTPM: 49.3
2437 Female, age 94, left hemisphere 53.3
1892 Male, age 76, both hemispheres 53.1
1963 Male, age 80, left hemisphere 51.4
2249 Male, age 74, both hemispheres 48.7
2113 Female, age 91, right hemisphere 45.5
1940 Female, age 85, left hemisphere 43.8
Hippocampus, CA3
nTPM: 52.3
2137 Male, age 80, left hemisphere 71.9
2436 Male, age 74, both hemispheres 52.3
1867 Male, age 76, both hemispheres 50.6
2620 Female, age 94, left hemisphere 50.6
1891 Female, age 85, both hemispheres 45.4
2861 Female, age 67, both hemispheres 42.9
Parahippocampal cortex
nTPM: 45.3
2245 Female, age 91, both hemispheres 51.3
1850 Male, age 80, both hemispheres 49.1
1990 Female, age 91, right hemisphere 46.3
2018 Male, age 76, both hemispheres 44.8
2250 Female, age 67, right hemisphere 44.7
2692 Male, age 74, both hemispheres 44.2
2693 Female, age 94, both hemispheres 44.2
1933 Female, age 85, both hemispheres 43.3
2532 Female, age 72, left hemisphere 43.0
2622 Female, age 67, right hemisphere 41.8
Perirhinal gyrus
nTPM: 49.0
1794 Male, age 80, right hemisphere 54.1
1847 Female, age 91, left hemisphere 53.0
2848 Male, age 76, right hemisphere 46.7
1841 Female, age 85, right hemisphere 46.2
2521 Female, age 94, right hemisphere 44.9
Subiculum
nTPM: 48.8
1901 Male, age 80, both hemispheres 56.4
2438 Female, age 94, left hemisphere 52.5
2042 Male, age 76, both hemispheres 51.5
2619 Male, age 74, both hemispheres 45.2
1977 Female, age 85, both hemispheres 45.1
2729 Female, age 91, right hemisphere 42.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.7
Samples: 197

Max nTPM: 167.4
Min nTPM: 20.5
Std nTPM: 25.5
Median nTPM: 63.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 167.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 161.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 148.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 141.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 141.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 135.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 130.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 117.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 116.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 114.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 112.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 116.2
FF:10169-103B7 60 years, female 150.6
FF:10153-102I9 76 years, female 81.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 55.7
Samples: 4

Max nTPM: 74.0
Min nTPM: 42.3
Sample A Female 74.0
Sample B Female 50.9
Sample C Male 55.7
Sample D Male 42.3
Entorhinal cortex
nTPM: 46.3
Samples: 4

Max nTPM: 51.1
Min nTPM: 38.1
Sample A Female 51.1
Sample B Female 48.6
Sample C Male 47.5
Sample D Male 38.1
Subiculum
nTPM: 48.0
Samples: 4

Max nTPM: 64.0
Min nTPM: 40.2
Sample A Female 64.0
Sample B Female 43.2
Sample C Male 44.4
Sample D Male 40.2
Ventral hippocampus
nTPM: 53.1
Samples: 4

Max nTPM: 64.7
Min nTPM: 36.5
Sample A Female 56.5
Sample B Female 36.5
Sample C Male 64.7
Sample D Male 54.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 168.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 158.4
Samples: 4

Max nTPM: 166.6
Min nTPM: 152.1
Sample A Male 152.1
Sample B Male 162.0
Sample C Female 166.6
Sample D Female 152.8
Hippocampal formation
nTPM: 168.2
Samples: 4

Max nTPM: 185.6
Min nTPM: 151.1
Sample A Male 185.6
Sample B Male 151.1
Sample C Female 164.9
Sample D Female 171.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.0
81600144 Antisense, RP_080313_02_E11, Mouse strain C57BL/6J (56 days, male) 14.9
69735216 Antisense, RP_050503_02_C11, Mouse strain C57BL/6J (56 days, male) 13.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.