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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:44.9 nTPM
HPA:44.9 nTPM
GTEx:57.8 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:33.3 nTPM
Allen mouse:6.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA017375
Glial cells Low
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.6
1781 Male, age 74, unknown 43.0
2288 Male, age 75, left hemisphere 42.6
2290 Female, age 72, unknown 40.8
2846 Female, age 79, unknown 40.4
2289 Male, age 61, right hemisphere 39.8
1857 Female, age 85, left hemisphere 38.8
1854 Male, age 80, left hemisphere 36.7
2481 Female, age 94, left hemisphere 34.4
Claustrum
nTPM: 42.6
2645 Female, age 72, unknown 46.0
2284 Female, age 91, both hemispheres 45.7
2198 Male, age 80, both hemispheres 45.3
2568 Male, age 61, both hemispheres 43.7
2292 Female, age 85, both hemispheres 43.0
2196 Female, age 79, unknown 42.2
2491 Male, age 75, both hemispheres 40.8
1956 Male, age 74, unknown 40.0
2392 Female, age 94, both hemispheres 37.1
Globus pallidus, externus
nTPM: 37.4
2646 Male, age 61, right hemisphere 40.2
2395 Male, age 75, both hemispheres 38.9
2772 Female, age 79, unknown 36.4
2567 Female, age 72, unknown 35.8
1996 Male, age 80, right hemisphere 35.6
Globus pallidus, internus
nTPM: 38.0
2287 Male, age 75, right hemisphere 42.3
2483 Female, age 94, right hemisphere 38.9
2778 Female, age 91, both hemispheres 38.3
1818 Male, age 74, unknown 37.9
2566 Female, age 72, unknown 37.5
2111 Female, age 85, right hemisphere 35.9
2037 Male, age 80, right hemisphere 35.5
Nucleus accumbens
nTPM: 40.5
1856 Female, age 91, right hemisphere 44.7
1783 Male, age 74, unknown 44.3
2698 Female, age 72, unknown 44.3
2824 Male, age 61, right hemisphere 41.5
1806 Female, age 85, left hemisphere 39.8
2286 Male, age 75, left hemisphere 38.0
2391 Female, age 94, left hemisphere 35.8
2732 Male, age 80, right hemisphere 35.4
Nucleus basalis of Meynert
nTPM: 37.3
2569 Male, age 61, both hemispheres 40.1
2821 Male, age 75, both hemispheres 37.9
2484 Female, age 94, left hemisphere 37.1
2393 Male, age 80, right hemisphere 34.0
Nucleus of the diagonal band
nTPM: 44.9
2775 Male, age 80, right hemisphere 46.2
1812 Female, age 91, both hemispheres 45.9
2195 Female, age 85, both hemispheres 45.9
1979 Male, age 74, unknown 44.9
2029 Male, age 61, right hemisphere 41.3
Olfactory tubercle
nTPM: 42.1
1998 Female, age 91, both hemispheres 44.1
2487 Female, age 94, left hemisphere 42.9
1846 Male, age 80, right hemisphere 42.0
2856 Male, age 75, right hemisphere 39.3
Putamen
nTPM: 39.4
2647 Male, age 75, left hemisphere 43.8
1838 Male, age 80, right hemisphere 40.6
1829 Male, age 74, unknown 39.9
2466 Female, age 79, unknown 38.2
1937 Female, age 91, right hemisphere 38.1
2482 Female, age 94, left hemisphere 37.5
2489 Female, age 72, unknown 37.5
Septal nuclei
nTPM: 42.3
1960 Male, age 74, unknown 48.2
2629 Female, age 94, right hemisphere 45.7
2031 Female, age 72, unknown 44.1
2059 Female, age 85, both hemispheres 42.2
2009 Female, age 91, both hemispheres 41.9
2199 Male, age 80, right hemisphere 37.2
2394 Male, age 61, left hemisphere 36.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.9
Samples: 246

Max nTPM: 77.2
Min nTPM: 28.5
Std nTPM: 8.5
Median nTPM: 45.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 77.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 72.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 66.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 65.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 65.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 64.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 64.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 64.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 64.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 63.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 63.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 57.8
Samples: 246

Max nTPM: 100.7
Min nTPM: 27.2
Std nTPM: 11.2
Median nTPM: 58.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 100.7
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 85.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 80.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 79.7
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 79.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 78.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 78.5
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 78.0
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 77.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 76.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 76.1
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Brain - Putamen (basal ganglia)
Average nTPM: 47.6
Samples: 205

Max nTPM: 74.6
Min nTPM: 32.7
Std nTPM: 8.1
Median nTPM: 46.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 74.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 73.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 69.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 65.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 65.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 64.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 63.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 62.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 62.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 61.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 61.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.9
FF:10164-103B2 76 years, female 56.9
Globus pallidus
Scaled Tags Per Million: 40.4
FF:10161-103A8 76 years, female 41.3
FF:10175-103C4 60 years, female 39.4
Nucleus accumbens
Scaled Tags Per Million: 53.0
FF:10037-101F1 23-56 years, mixed 53.0
Putamen
Scaled Tags Per Million: 70.8
FF:10176-103C5 60 years, female 70.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.8
Pig sample Sample description nTPM
Caudate
nTPM: 50.8
Samples: 4

Max nTPM: 59.6
Min nTPM: 43.6
Sample A Female 43.6
Sample B Female 53.5
Sample C Male 59.6
Sample D Male 46.6
Putamen
nTPM: 48.4
Samples: 4

Max nTPM: 56.5
Min nTPM: 37.5
Sample A Female 37.5
Sample B Female 44.4
Sample C Male 56.5
Sample D Male 55.0
Septum
nTPM: 46.2
Samples: 4

Max nTPM: 50.4
Min nTPM: 40.8
Sample A Female 50.4
Sample B Female 45.9
Sample C Male 47.8
Sample D Male 40.8
Ventral pallidum
nTPM: 46.9
Samples: 4

Max nTPM: 48.1
Min nTPM: 45.4
Sample A Female 48.1
Sample B Female 45.4
Sample C Male 46.5
Sample D Male 47.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.3
Samples: 4

Max nTPM: 33.9
Min nTPM: 31.9
Sample A Male 33.9
Sample B Male 33.7
Sample C Female 33.8
Sample D Female 31.9
Septum
nTPM: 30.7
Samples: 4

Max nTPM: 32.0
Min nTPM: 28.6
Sample A Male 31.3
Sample B Male 30.7
Sample C Female 28.6
Sample D Female 32.0
Ventral forebrain
nTPM: 29.9
Samples: 4

Max nTPM: 31.4
Min nTPM: 27.8
Sample A Male 27.8
Sample B Male 31.4
Sample C Female 29.4
Sample D Female 31.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.1
583864 Antisense, RP_040831_01_C03, Mouse strain C57BL/6J (56 days, male) 6.1
Pallidum
Expression energy: 5.5
583864 Antisense, RP_040831_01_C03, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.