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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:32.3 nTPM
HPA:32.3 nTPM
GTEx:26.3 nTPM
FANTOM5:117.8 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:126.1 nTPM
Allen mouse:9.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA060538
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Hippocampus
nTPM: 28.9
1898 Male, age 80, left hemisphere 32.2
1855 Male, age 76, left hemisphere 29.6
1911 Female, age 85, right hemisphere 29.1
2148 Female, age 91, left hemisphere 27.8
2529 Female, age 94, left hemisphere 27.6
2621 Female, age 67, right hemisphere 27.4
Dentate gyrus
nTPM: 29.4
1927 Female, age 91, both hemispheres 31.3
2246 Female, age 85, both hemispheres 30.3
2010 Male, age 76, both hemispheres 29.9
2528 Male, age 74, both hemispheres 29.3
2531 Female, age 67, both hemispheres 27.9
2530 Female, age 94, left hemisphere 27.7
Entorhinal gyrus
nTPM: 28.3
1938 Female, age 85, left hemisphere 30.1
2764 Male, age 80, right hemisphere 28.8
1787 Male, age 76, left hemisphere 28.5
2117 Female, age 91, right hemisphere 28.0
2613 Female, age 94, left hemisphere 27.3
2686 Male, age 75, right hemisphere 27.0
Hippocampus, CA1
nTPM: 31.2
2749 Male, age 80, left hemisphere 38.5
2527 Male, age 74, both hemispheres 30.2
1873 Female, age 85, both hemispheres 30.0
2082 Female, age 91, right hemisphere 28.8
2045 Male, age 76, both hemispheres 28.5
Hippocampus, CA2
nTPM: 29.8
1892 Male, age 76, both hemispheres 32.6
2249 Male, age 74, both hemispheres 31.2
2113 Female, age 91, right hemisphere 29.8
1963 Male, age 80, left hemisphere 29.2
1940 Female, age 85, left hemisphere 28.4
2437 Female, age 94, left hemisphere 27.6
Hippocampus, CA3
nTPM: 31.0
2137 Male, age 80, left hemisphere 37.7
2436 Male, age 74, both hemispheres 31.8
1867 Male, age 76, both hemispheres 31.1
1891 Female, age 85, both hemispheres 29.4
2620 Female, age 94, left hemisphere 28.7
2861 Female, age 67, both hemispheres 27.2
Parahippocampal cortex
nTPM: 30.1
2250 Female, age 67, right hemisphere 32.5
1850 Male, age 80, both hemispheres 31.4
2693 Female, age 94, both hemispheres 31.2
2245 Female, age 91, both hemispheres 31.1
1990 Female, age 91, right hemisphere 30.8
1933 Female, age 85, both hemispheres 30.4
2532 Female, age 72, left hemisphere 30.3
2018 Male, age 76, both hemispheres 28.4
2692 Male, age 74, both hemispheres 28.3
2622 Female, age 67, right hemisphere 26.4
Perirhinal gyrus
nTPM: 32.3
1841 Female, age 85, right hemisphere 33.4
2521 Female, age 94, right hemisphere 33.3
1794 Male, age 80, right hemisphere 33.0
1847 Female, age 91, left hemisphere 31.0
2848 Male, age 76, right hemisphere 30.7
Subiculum
nTPM: 29.0
1901 Male, age 80, both hemispheres 31.4
1977 Female, age 85, both hemispheres 31.4
2619 Male, age 74, both hemispheres 27.9
2729 Female, age 91, right hemisphere 27.9
2438 Female, age 94, left hemisphere 27.8
2042 Male, age 76, both hemispheres 27.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.3
Samples: 197

Max nTPM: 69.3
Min nTPM: 14.6
Std nTPM: 7.2
Median nTPM: 24.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 69.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 69.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 43.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 42.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 40.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 39.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 39.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 38.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 38.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 36.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 36.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 117.8
FF:10169-103B7 60 years, female 125.5
FF:10153-102I9 76 years, female 110.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 44.7
Samples: 4

Max nTPM: 54.9
Min nTPM: 37.4
Sample A Female 54.9
Sample B Female 43.6
Sample C Male 42.7
Sample D Male 37.4
Entorhinal cortex
nTPM: 41.2
Samples: 4

Max nTPM: 49.5
Min nTPM: 35.5
Sample A Female 43.6
Sample B Female 49.5
Sample C Male 36.0
Sample D Male 35.5
Subiculum
nTPM: 37.7
Samples: 4

Max nTPM: 48.8
Min nTPM: 33.5
Sample A Female 48.8
Sample B Female 34.0
Sample C Male 34.6
Sample D Male 33.5
Ventral hippocampus
nTPM: 39.2
Samples: 4

Max nTPM: 42.4
Min nTPM: 31.5
Sample A Female 42.4
Sample B Female 31.5
Sample C Male 42.0
Sample D Male 40.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 126.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 115.0
Samples: 4

Max nTPM: 119.3
Min nTPM: 111.6
Sample A Male 111.6
Sample B Male 119.3
Sample C Female 116.8
Sample D Female 112.2
Hippocampal formation
nTPM: 126.1
Samples: 4

Max nTPM: 130.4
Min nTPM: 117.2
Sample A Male 130.4
Sample B Male 130.0
Sample C Female 126.7
Sample D Female 117.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.8
71763753 Antisense, RP_050921_02_F02, Mouse strain C57BL/6J (56 days, male) 9.8

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