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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:134.2 nTPM
HPA:134.2 nTPM
GTEx:91.5 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:46.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 134.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.7
1827 Male, age 72, unknown 110.3
2828 Female, age 72, unknown 104.2
1870 Female, age 42, unknown 103.6
2586 Male, age 75, left hemisphere 103.1
2666 Male, age 74, left hemisphere 98.4
1833 Male, age 53, unknown 89.9
2411 Female, age 72, unknown 88.0
1830 Male, age 51, unknown 87.6
2019 Male, age 18, unknown 78.5
2219 Male, age 76, both hemispheres 73.9
Dorsal raphe nucleus
nTPM: 134.2
2047 Male, age 72, unknown 171.7
2298 Female, age 72, unknown 152.5
2016 Female, age 72, unknown 130.3
1828 Male, age 53, unknown 110.8
2750 Male, age 76, both hemispheres 105.8
Inferior colliculus
nTPM: 95.2
1848 Female, age 42, unknown 102.8
2849 Male, age 72, unknown 100.2
2097 Female, age 72, unknown 93.0
1890 Male, age 53, unknown 84.9
Median raphe nucleus
nTPM: 127.2
2220 Male, age 76, midline 127.2
Pedunculopontine tegmental nucleus
nTPM: 91.9
2338 Male, age 61, both hemispheres 98.4
2334 Male, age 80, both hemispheres 92.1
1921 Female, age 85, both hemispheres 85.3
Periaquaductal grey, anterior
nTPM: 106.7
1795 Male, age 51, unknown 122.3
1947 Male, age 18, unknown 109.7
2502 Female, age 75, unknown 88.0
Periaquaductal grey, dorsal
nTPM: 118.0
2850 Male, age 76, both hemispheres 130.6
1840 Male, age 53, unknown 125.6
1831 Male, age 72, unknown 115.9
2464 Female, age 72, unknown 99.8
Periaquaductal grey, lateral
nTPM: 126.2
2272 Male, age 74, both hemispheres 134.2
2053 Male, age 18, unknown 125.4
2140 Male, age 76, both hemispheres 118.9
Pretectal area
nTPM: 104.7
2224 Female, age 72, unknown 128.4
2273 Male, age 74, both hemispheres 123.8
2825 Male, age 18, unknown 121.7
1816 Male, age 51, unknown 105.5
2316 Male, age 76, right hemisphere 99.8
2407 Male, age 75, both hemispheres 99.8
2667 Female, age 75, unknown 99.4
1944 Female, age 72, unknown 98.8
1815 Male, age 53, unknown 95.9
1817 Female, age 42, unknown 92.8
2007 Male, age 72, unknown 85.5
Red nucleus
nTPM: 85.9
2725 Female, age 75, unknown 116.6
2823 Male, age 76, right hemisphere 95.9
2503 Female, age 72, unknown 94.2
2584 Male, age 75, left hemisphere 86.9
2588 Male, age 74, left hemisphere 84.8
1821 Female, age 72, unknown 83.0
2769 Male, age 72, unknown 80.3
2785 Male, age 18, unknown 80.2
2227 Male, age 72, unknown 79.3
1954 Female, age 42, unknown 77.1
1865 Male, age 51, unknown 77.0
1904 Male, age 53, unknown 75.1
Substantia nigra
nTPM: 92.3
2409 Female, age 72, unknown 102.7
2590 Female, age 75, unknown 96.4
1941 Male, age 53, unknown 95.0
1889 Female, age 72, unknown 94.7
2699 Male, age 18, unknown 94.2
1851 Male, age 51, unknown 93.8
2583 Male, age 75, right hemisphere 91.5
2241 Male, age 72, unknown 87.6
1916 Female, age 42, unknown 85.6
2665 Male, age 74, both hemispheres 81.5
Superior colliculus
nTPM: 99.0
1796 Male, age 53, unknown 112.8
2664 Male, age 75, both hemispheres 109.9
2261 Male, age 18, unknown 103.8
2587 Male, age 74, left hemisphere 103.4
1839 Male, age 51, unknown 101.5
2087 Female, age 72, unknown 96.4
1995 Male, age 72, unknown 96.2
1913 Female, age 42, unknown 94.9
1895 Male, age 76, right hemisphere 86.5
2668 Female, age 75, unknown 84.3
Ventral tegmental area
nTPM: 111.6
2021 Male, age 53, unknown 159.3
1915 Female, age 42, unknown 120.4
1942 Male, age 51, unknown 103.7
2223 Female, age 72, unknown 102.9
2218 Male, age 76, both hemispheres 92.3
2410 Female, age 72, unknown 91.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.5
Samples: 139

Max nTPM: 308.3
Min nTPM: 19.0
Std nTPM: 52.2
Median nTPM: 82.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 308.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 265.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 262.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 257.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 251.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 248.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 238.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 231.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 192.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 178.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 164.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.3
Pig sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 66.0
Min nTPM: 24.1
Sample A Female 24.1
Sample B Female 29.9
Sample C Male 66.0
Sample D Male 57.2
Periaqueductal gray
nTPM: 54.3
Samples: 3

Max nTPM: 93.6
Min nTPM: 30.4
Sample B Female 30.4
Sample C Male 93.6
Sample D Male 39.0
Substantia nigra
nTPM: 40.3
Samples: 4

Max nTPM: 57.9
Min nTPM: 23.0
Sample A Female 49.9
Sample B Female 30.4
Sample C Male 57.9
Sample D Male 23.0
Superior colliculi
nTPM: 38.9
Samples: 4

Max nTPM: 50.0
Min nTPM: 31.1
Sample A Female 43.0
Sample B Female 31.1
Sample C Male 50.0
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.2
Samples: 4

Max nTPM: 47.4
Min nTPM: 43.7
Sample A Male 43.7
Sample B Male 47.4
Sample C Female 47.4
Sample D Female 46.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69736456 Antisense, RP_050503_04_G12, Mouse strain C57BL/6J (56 days, male) 0.6
71670489 Antisense, RP_050503_04_G12, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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