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PFN2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:268.1 nTPM
HPA:268.1 nTPM
GTEx:288.8 nTPM
FANTOM5:335.6 Scaled Tags Per Million
Pig:583.5 nTPM
Mouse:617.1 nTPM
Allen mouse:14.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035611Antibody CAB037073
Glial cells LowLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 268.1
Sample id Sample description nTPM
Hippocampus
nTPM: 215.6
1898 Male, age 80, left hemisphere 258.9
1855 Male, age 76, left hemisphere 237.9
2621 Female, age 67, right hemisphere 229.3
1911 Female, age 85, right hemisphere 202.7
2148 Female, age 91, left hemisphere 198.6
2529 Female, age 94, left hemisphere 166.2
Dentate gyrus
nTPM: 223.9
1927 Female, age 91, both hemispheres 321.1
2010 Male, age 76, both hemispheres 260.8
2246 Female, age 85, both hemispheres 201.0
2530 Female, age 94, left hemisphere 196.5
2528 Male, age 74, both hemispheres 196.4
2531 Female, age 67, both hemispheres 167.8
Entorhinal gyrus
nTPM: 174.9
1938 Female, age 85, left hemisphere 201.9
2764 Male, age 80, right hemisphere 191.7
1787 Male, age 76, left hemisphere 172.5
2613 Female, age 94, left hemisphere 163.1
2117 Female, age 91, right hemisphere 162.7
2686 Male, age 75, right hemisphere 157.8
Hippocampus, CA1
nTPM: 268.1
2749 Male, age 80, left hemisphere 472.9
1873 Female, age 85, both hemispheres 267.2
2045 Male, age 76, both hemispheres 220.5
2527 Male, age 74, both hemispheres 202.9
2082 Female, age 91, right hemisphere 177.0
Hippocampus, CA2
nTPM: 234.0
1963 Male, age 80, left hemisphere 368.6
1892 Male, age 76, both hemispheres 312.7
2249 Male, age 74, both hemispheres 210.5
1940 Female, age 85, left hemisphere 176.9
2113 Female, age 91, right hemisphere 172.5
2437 Female, age 94, left hemisphere 163.1
Hippocampus, CA3
nTPM: 233.8
2137 Male, age 80, left hemisphere 409.2
1867 Male, age 76, both hemispheres 249.0
2436 Male, age 74, both hemispheres 206.2
2620 Female, age 94, left hemisphere 190.4
1891 Female, age 85, both hemispheres 182.1
2861 Female, age 67, both hemispheres 165.8
Parahippocampal cortex
nTPM: 194.5
1850 Male, age 80, both hemispheres 230.5
2245 Female, age 91, both hemispheres 225.0
2693 Female, age 94, both hemispheres 198.2
1933 Female, age 85, both hemispheres 197.9
2250 Female, age 67, right hemisphere 194.7
2532 Female, age 72, left hemisphere 194.5
1990 Female, age 91, right hemisphere 188.3
2018 Male, age 76, both hemispheres 184.3
2622 Female, age 67, right hemisphere 166.8
2692 Male, age 74, both hemispheres 164.7
Perirhinal gyrus
nTPM: 221.1
1841 Female, age 85, right hemisphere 234.9
1794 Male, age 80, right hemisphere 231.6
1847 Female, age 91, left hemisphere 230.2
2521 Female, age 94, right hemisphere 217.0
2848 Male, age 76, right hemisphere 191.9
Subiculum
nTPM: 192.8
1901 Male, age 80, both hemispheres 250.4
2042 Male, age 76, both hemispheres 208.8
1977 Female, age 85, both hemispheres 194.3
2729 Female, age 91, right hemisphere 172.8
2619 Male, age 74, both hemispheres 166.2
2438 Female, age 94, left hemisphere 164.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 288.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 288.8
Samples: 197

Max nTPM: 707.6
Min nTPM: 84.1
Std nTPM: 134.1
Median nTPM: 271.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 707.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 620.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 613.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 590.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 577.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 574.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 555.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 549.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 544.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 537.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 535.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 335.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 335.6
FF:10169-103B7 60 years, female 449.9
FF:10153-102I9 76 years, female 221.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 583.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 583.5
Samples: 4

Max nTPM: 811.5
Min nTPM: 405.0
Sample A Female 811.5
Sample B Female 625.2
Sample C Male 405.0
Sample D Male 492.1
Entorhinal cortex
nTPM: 313.5
Samples: 4

Max nTPM: 371.7
Min nTPM: 259.3
Sample A Female 323.5
Sample B Female 371.7
Sample C Male 299.6
Sample D Male 259.3
Subiculum
nTPM: 281.8
Samples: 4

Max nTPM: 369.6
Min nTPM: 244.1
Sample A Female 369.6
Sample B Female 254.9
Sample C Male 258.6
Sample D Male 244.1
Ventral hippocampus
nTPM: 386.9
Samples: 4

Max nTPM: 621.0
Min nTPM: 266.8
Sample A Female 348.2
Sample B Female 266.8
Sample C Male 311.7
Sample D Male 621.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 617.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 502.3
Samples: 4

Max nTPM: 530.4
Min nTPM: 485.3
Sample A Male 489.0
Sample B Male 504.3
Sample C Female 530.4
Sample D Female 485.3
Hippocampal formation
nTPM: 617.2
Samples: 4

Max nTPM: 668.6
Min nTPM: 550.0
Sample A Male 668.6
Sample B Male 607.2
Sample C Female 642.9
Sample D Female 550.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.9
1262 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 14.9
1261 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 13.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.