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DGCR2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:45.5 nTPM
FANTOM5:91.3 Scaled Tags Per Million
Pig:31.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA000873
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.8
2290 Female, age 72, unknown 39.0
1781 Male, age 74, unknown 38.9
1857 Female, age 85, left hemisphere 35.6
2288 Male, age 75, left hemisphere 34.5
2846 Female, age 79, unknown 34.3
1854 Male, age 80, left hemisphere 33.6
2481 Female, age 94, left hemisphere 33.3
2289 Male, age 61, right hemisphere 29.5
Claustrum
nTPM: 39.0
2645 Female, age 72, unknown 43.3
2568 Male, age 61, both hemispheres 42.1
2284 Female, age 91, both hemispheres 42.0
2491 Male, age 75, both hemispheres 41.0
2198 Male, age 80, both hemispheres 39.0
2392 Female, age 94, both hemispheres 37.1
2196 Female, age 79, unknown 36.0
2292 Female, age 85, both hemispheres 35.8
1956 Male, age 74, unknown 34.7
Globus pallidus, externus
nTPM: 37.8
2567 Female, age 72, unknown 41.0
1996 Male, age 80, right hemisphere 38.5
2646 Male, age 61, right hemisphere 37.6
2772 Female, age 79, unknown 36.0
2395 Male, age 75, both hemispheres 35.7
Globus pallidus, internus
nTPM: 35.7
2483 Female, age 94, right hemisphere 37.6
2566 Female, age 72, unknown 37.0
2287 Male, age 75, right hemisphere 36.5
1818 Male, age 74, unknown 36.1
2037 Male, age 80, right hemisphere 34.3
2778 Female, age 91, both hemispheres 34.1
2111 Female, age 85, right hemisphere 34.0
Nucleus accumbens
nTPM: 35.8
1783 Male, age 74, unknown 38.9
1806 Female, age 85, left hemisphere 38.4
1856 Female, age 91, right hemisphere 38.0
2824 Male, age 61, right hemisphere 36.8
2286 Male, age 75, left hemisphere 36.5
2698 Female, age 72, unknown 34.6
2732 Male, age 80, right hemisphere 33.0
2391 Female, age 94, left hemisphere 29.9
Nucleus basalis of Meynert
nTPM: 33.7
2569 Male, age 61, both hemispheres 38.6
2484 Female, age 94, left hemisphere 33.9
2821 Male, age 75, both hemispheres 31.7
2393 Male, age 80, right hemisphere 30.4
Nucleus of the diagonal band
nTPM: 40.4
2029 Male, age 61, right hemisphere 48.4
1812 Female, age 91, both hemispheres 40.5
2775 Male, age 80, right hemisphere 39.5
1979 Male, age 74, unknown 37.0
2195 Female, age 85, both hemispheres 36.8
Olfactory tubercle
nTPM: 40.3
1998 Female, age 91, both hemispheres 42.8
2487 Female, age 94, left hemisphere 39.6
1846 Male, age 80, right hemisphere 39.5
2856 Male, age 75, right hemisphere 39.3
Putamen
nTPM: 35.3
2647 Male, age 75, left hemisphere 43.8
2489 Female, age 72, unknown 35.9
2466 Female, age 79, unknown 34.8
1829 Male, age 74, unknown 34.5
1937 Female, age 91, right hemisphere 33.8
1838 Male, age 80, right hemisphere 33.4
2482 Female, age 94, left hemisphere 31.3
Septal nuclei
nTPM: 37.4
2031 Female, age 72, unknown 40.6
1960 Male, age 74, unknown 40.3
2394 Male, age 61, left hemisphere 38.8
2059 Female, age 85, both hemispheres 37.1
2009 Female, age 91, both hemispheres 36.1
2629 Female, age 94, right hemisphere 35.2
2199 Male, age 80, right hemisphere 33.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.7
Samples: 246

Max nTPM: 65.1
Min nTPM: 19.9
Std nTPM: 7.4
Median nTPM: 42.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 65.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 63.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 57.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 57.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 57.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 57.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 54.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 54.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 54.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 53.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.5
Samples: 246

Max nTPM: 70.4
Min nTPM: 20.4
Std nTPM: 8.6
Median nTPM: 46.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 70.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 68.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 65.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 63.2
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 62.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 60.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 60.7
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 60.4
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 59.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 59.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 59.4
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Brain - Putamen (basal ganglia)
Average nTPM: 42.8
Samples: 205

Max nTPM: 63.6
Min nTPM: 16.8
Std nTPM: 6.8
Median nTPM: 42.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 63.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 59.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 59.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 58.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 57.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 56.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 56.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 55.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 54.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 54.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 54.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.3
FF:10164-103B2 76 years, female 85.3
Globus pallidus
Scaled Tags Per Million: 68.1
FF:10161-103A8 76 years, female 71.5
FF:10175-103C4 60 years, female 64.7
Nucleus accumbens
Scaled Tags Per Million: 76.8
FF:10037-101F1 23-56 years, mixed 76.8
Putamen
Scaled Tags Per Million: 91.3
FF:10176-103C5 60 years, female 91.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.4
Pig sample Sample description nTPM
Caudate
nTPM: 23.8
Samples: 4

Max nTPM: 25.7
Min nTPM: 21.1
Sample A Female 21.1
Sample B Female 25.7
Sample C Male 25.1
Sample D Male 23.4
Putamen
nTPM: 25.5
Samples: 4

Max nTPM: 28.6
Min nTPM: 20.1
Sample A Female 28.6
Sample B Female 20.1
Sample C Male 25.4
Sample D Male 28.0
Septum
nTPM: 31.4
Samples: 4

Max nTPM: 40.0
Min nTPM: 27.0
Sample A Female 27.3
Sample B Female 27.0
Sample C Male 40.0
Sample D Male 31.4
Ventral pallidum
nTPM: 28.3
Samples: 4

Max nTPM: 39.3
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 25.3
Sample C Male 39.3
Sample D Male 27.4

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The Human Protein Atlas

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