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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA:36.3 nTPM
GTEx:33.7 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:6.7 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2586 Male, age 75, left hemisphere 36.0
2666 Male, age 74, left hemisphere 35.8
1830 Male, age 51, unknown 33.9
2828 Female, age 72, unknown 33.7
1833 Male, age 53, unknown 32.6
2219 Male, age 76, both hemispheres 32.1
2019 Male, age 18, unknown 31.3
2411 Female, age 72, unknown 30.9
1870 Female, age 42, unknown 30.7
1827 Male, age 72, unknown 27.8
Dorsal raphe nucleus
nTPM: 27.8
2750 Male, age 76, both hemispheres 31.2
2016 Female, age 72, unknown 28.6
1828 Male, age 53, unknown 28.3
2047 Male, age 72, unknown 27.7
2298 Female, age 72, unknown 23.3
Inferior colliculus
nTPM: 27.2
1890 Male, age 53, unknown 28.6
2849 Male, age 72, unknown 28.0
1848 Female, age 42, unknown 27.3
2097 Female, age 72, unknown 24.9
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Pedunculopontine tegmental nucleus
nTPM: 29.3
2338 Male, age 61, both hemispheres 32.4
2334 Male, age 80, both hemispheres 30.3
1921 Female, age 85, both hemispheres 25.1
Periaquaductal grey, anterior
nTPM: 26.6
1795 Male, age 51, unknown 27.2
1947 Male, age 18, unknown 26.5
2502 Female, age 75, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 25.4
1831 Male, age 72, unknown 29.3
2464 Female, age 72, unknown 27.7
2850 Male, age 76, both hemispheres 22.5
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 25.3
2053 Male, age 18, unknown 28.1
2272 Male, age 74, both hemispheres 24.7
2140 Male, age 76, both hemispheres 23.2
Pretectal area
nTPM: 26.2
2407 Male, age 75, both hemispheres 31.8
2316 Male, age 76, right hemisphere 29.0
1815 Male, age 53, unknown 28.9
2825 Male, age 18, unknown 28.0
2007 Male, age 72, unknown 27.5
1817 Female, age 42, unknown 26.9
2224 Female, age 72, unknown 24.6
1816 Male, age 51, unknown 23.7
1944 Female, age 72, unknown 23.6
2273 Male, age 74, both hemispheres 22.7
2667 Female, age 75, unknown 21.6
Red nucleus
nTPM: 36.3
2588 Male, age 74, left hemisphere 42.4
1904 Male, age 53, unknown 39.2
2584 Male, age 75, left hemisphere 38.1
2769 Male, age 72, unknown 37.3
1865 Male, age 51, unknown 36.7
2227 Male, age 72, unknown 36.5
2725 Female, age 75, unknown 36.5
1954 Female, age 42, unknown 35.8
2503 Female, age 72, unknown 35.6
2823 Male, age 76, right hemisphere 34.4
2785 Male, age 18, unknown 32.4
1821 Female, age 72, unknown 31.0
Substantia nigra
nTPM: 30.9
2583 Male, age 75, right hemisphere 39.7
2590 Female, age 75, unknown 38.2
2665 Male, age 74, both hemispheres 36.6
2699 Male, age 18, unknown 32.2
1851 Male, age 51, unknown 29.1
2409 Female, age 72, unknown 28.8
1941 Male, age 53, unknown 27.2
1889 Female, age 72, unknown 26.7
1916 Female, age 42, unknown 26.0
2241 Male, age 72, unknown 24.4
Superior colliculus
nTPM: 29.2
2664 Male, age 75, both hemispheres 34.0
1995 Male, age 72, unknown 31.7
1913 Female, age 42, unknown 31.2
2587 Male, age 74, left hemisphere 30.9
1839 Male, age 51, unknown 30.2
2668 Female, age 75, unknown 29.0
1895 Male, age 76, right hemisphere 27.0
1796 Male, age 53, unknown 26.5
2261 Male, age 18, unknown 26.1
2087 Female, age 72, unknown 25.3
Ventral tegmental area
nTPM: 29.5
2223 Female, age 72, unknown 32.2
2021 Male, age 53, unknown 31.8
1942 Male, age 51, unknown 30.0
2410 Female, age 72, unknown 28.1
1915 Female, age 42, unknown 27.6
2218 Male, age 76, both hemispheres 27.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 73.5
Min nTPM: 9.0
Std nTPM: 13.0
Median nTPM: 30.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 73.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 71.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 65.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 63.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 62.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 58.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 56.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 56.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.6
FF:10158-103A5 76 years, female 40.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.6
Pig sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 24.0
Min nTPM: 9.2
Sample A Female 24.0
Sample B Female 13.0
Sample C Male 9.2
Sample D Male 10.8
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 11.4
Min nTPM: 10.9
Sample B Female 11.4
Sample C Male 11.3
Sample D Male 10.9
Substantia nigra
nTPM: 14.6
Samples: 4

Max nTPM: 20.1
Min nTPM: 10.9
Sample A Female 13.5
Sample B Female 10.9
Sample C Male 13.7
Sample D Male 20.1
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 13.6
Min nTPM: 6.6
Sample A Female 10.4
Sample B Female 6.6
Sample C Male 10.0
Sample D Male 13.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.0
Sample A Male 6.7
Sample B Male 6.0
Sample C Female 6.6
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69672671 Antisense, RP_050428_04_C05, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.