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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:36.7 nTPM
HPA:36.7 nTPM
GTEx:36.5 nTPM
FANTOM5:44.3 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:21.9 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA052185
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.7
2481 Female, age 94, left hemisphere 38.9
2288 Male, age 75, left hemisphere 37.5
2289 Male, age 61, right hemisphere 35.8
2846 Female, age 79, unknown 35.7
2290 Female, age 72, unknown 35.1
1857 Female, age 85, left hemisphere 35.0
1854 Male, age 80, left hemisphere 34.7
1781 Male, age 74, unknown 32.7
Claustrum
nTPM: 34.3
2392 Female, age 94, both hemispheres 36.2
1956 Male, age 74, unknown 35.7
2198 Male, age 80, both hemispheres 35.6
2645 Female, age 72, unknown 34.6
2292 Female, age 85, both hemispheres 34.5
2284 Female, age 91, both hemispheres 33.4
2568 Male, age 61, both hemispheres 33.0
2196 Female, age 79, unknown 32.8
2491 Male, age 75, both hemispheres 32.7
Globus pallidus, externus
nTPM: 34.3
2395 Male, age 75, both hemispheres 37.0
2772 Female, age 79, unknown 36.5
1996 Male, age 80, right hemisphere 36.2
2646 Male, age 61, right hemisphere 31.3
2567 Female, age 72, unknown 30.5
Globus pallidus, internus
nTPM: 35.1
2287 Male, age 75, right hemisphere 40.0
1818 Male, age 74, unknown 36.4
2778 Female, age 91, both hemispheres 35.7
2037 Male, age 80, right hemisphere 34.7
2111 Female, age 85, right hemisphere 33.8
2566 Female, age 72, unknown 32.5
2483 Female, age 94, right hemisphere 32.4
Nucleus accumbens
nTPM: 36.6
2824 Male, age 61, right hemisphere 43.1
2391 Female, age 94, left hemisphere 37.1
1856 Female, age 91, right hemisphere 37.0
2286 Male, age 75, left hemisphere 36.9
1806 Female, age 85, left hemisphere 35.8
1783 Male, age 74, unknown 35.0
2698 Female, age 72, unknown 35.0
2732 Male, age 80, right hemisphere 33.1
Nucleus basalis of Meynert
nTPM: 34.5
2821 Male, age 75, both hemispheres 35.5
2393 Male, age 80, right hemisphere 35.4
2484 Female, age 94, left hemisphere 34.9
2569 Male, age 61, both hemispheres 32.2
Nucleus of the diagonal band
nTPM: 36.3
2775 Male, age 80, right hemisphere 38.2
1812 Female, age 91, both hemispheres 37.0
2029 Male, age 61, right hemisphere 36.7
1979 Male, age 74, unknown 35.2
2195 Female, age 85, both hemispheres 34.5
Olfactory tubercle
nTPM: 36.7
2856 Male, age 75, right hemisphere 37.8
1846 Male, age 80, right hemisphere 36.5
2487 Female, age 94, left hemisphere 36.5
1998 Female, age 91, both hemispheres 35.9
Putamen
nTPM: 36.6
1937 Female, age 91, right hemisphere 39.7
2466 Female, age 79, unknown 39.3
1838 Male, age 80, right hemisphere 38.3
1829 Male, age 74, unknown 36.5
2489 Female, age 72, unknown 36.4
2482 Female, age 94, left hemisphere 33.6
2647 Male, age 75, left hemisphere 32.7
Septal nuclei
nTPM: 35.2
2009 Female, age 91, both hemispheres 37.0
2031 Female, age 72, unknown 36.6
1960 Male, age 74, unknown 36.1
2059 Female, age 85, both hemispheres 36.0
2629 Female, age 94, right hemisphere 34.3
2394 Male, age 61, left hemisphere 34.0
2199 Male, age 80, right hemisphere 32.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.6
Samples: 246

Max nTPM: 62.8
Min nTPM: 17.6
Std nTPM: 6.2
Median nTPM: 32.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 62.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 58.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 53.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 49.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 49.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 48.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 48.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 48.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 47.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 47.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.8
Samples: 246

Max nTPM: 64.8
Min nTPM: 17.9
Std nTPM: 6.3
Median nTPM: 33.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 64.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 61.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 59.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 58.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 53.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 48.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 48.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 48.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 48.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 47.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 45.4
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Brain - Putamen (basal ganglia)
Average nTPM: 36.5
Samples: 205

Max nTPM: 82.7
Min nTPM: 17.9
Std nTPM: 6.9
Median nTPM: 35.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 82.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 61.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 51.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 51.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 51.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 51.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 50.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 49.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 49.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 48.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 47.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.3
FF:10164-103B2 76 years, female 44.3
Globus pallidus
Scaled Tags Per Million: 42.5
FF:10161-103A8 76 years, female 47.1
FF:10175-103C4 60 years, female 37.8
Nucleus accumbens
Scaled Tags Per Million: 39.2
FF:10037-101F1 23-56 years, mixed 39.2
Putamen
Scaled Tags Per Million: 43.0
FF:10176-103C5 60 years, female 43.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Caudate
nTPM: 17.5
Samples: 4

Max nTPM: 19.7
Min nTPM: 15.4
Sample A Female 17.5
Sample B Female 17.4
Sample C Male 19.7
Sample D Male 15.4
Putamen
nTPM: 21.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 18.0
Sample A Female 22.3
Sample B Female 18.0
Sample C Male 25.1
Sample D Male 19.7
Septum
nTPM: 17.3
Samples: 4

Max nTPM: 19.7
Min nTPM: 14.9
Sample A Female 19.7
Sample B Female 15.8
Sample C Male 18.8
Sample D Male 14.9
Ventral pallidum
nTPM: 17.9
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.4
Sample A Female 15.8
Sample B Female 20.2
Sample C Male 20.3
Sample D Male 15.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.8
Samples: 4

Max nTPM: 23.5
Min nTPM: 19.3
Sample A Male 20.2
Sample B Male 23.5
Sample C Female 20.2
Sample D Female 19.3
Septum
nTPM: 22.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 21.4
Sample A Male 21.4
Sample B Male 22.5
Sample C Female 21.8
Sample D Female 22.1
Ventral forebrain
nTPM: 21.2
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.2
Sample A Male 19.4
Sample B Male 19.2
Sample C Female 22.5
Sample D Female 23.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
70194964 Antisense, RP_050517_02_B03, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.8
70194964 Antisense, RP_050517_02_B03, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.