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FAM50A
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:59.8 nTPM
HPA:59.8 nTPM
GTEx:60.8 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:23.3 nTPM
Allen mouse:9.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003585
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 59.8
Sample id Sample description nTPM
Hippocampus
nTPM: 58.8
2529 Female, age 94, left hemisphere 62.6
1898 Male, age 80, left hemisphere 59.1
2621 Female, age 67, right hemisphere 58.9
2148 Female, age 91, left hemisphere 57.8
1911 Female, age 85, right hemisphere 57.6
1855 Male, age 76, left hemisphere 56.9
Dentate gyrus
nTPM: 58.7
2530 Female, age 94, left hemisphere 62.8
2010 Male, age 76, both hemispheres 60.9
2528 Male, age 74, both hemispheres 58.2
1927 Female, age 91, both hemispheres 57.5
2531 Female, age 67, both hemispheres 57.3
2246 Female, age 85, both hemispheres 55.8
Entorhinal gyrus
nTPM: 58.3
2117 Female, age 91, right hemisphere 60.7
2764 Male, age 80, right hemisphere 60.5
1787 Male, age 76, left hemisphere 58.1
2613 Female, age 94, left hemisphere 56.9
1938 Female, age 85, left hemisphere 56.8
2686 Male, age 75, right hemisphere 56.8
Hippocampus, CA1
nTPM: 57.8
2527 Male, age 74, both hemispheres 59.1
2749 Male, age 80, left hemisphere 58.8
1873 Female, age 85, both hemispheres 58.6
2082 Female, age 91, right hemisphere 56.8
2045 Male, age 76, both hemispheres 55.8
Hippocampus, CA2
nTPM: 58.6
1892 Male, age 76, both hemispheres 61.4
2437 Female, age 94, left hemisphere 59.6
1940 Female, age 85, left hemisphere 59.1
1963 Male, age 80, left hemisphere 58.5
2249 Male, age 74, both hemispheres 57.1
2113 Female, age 91, right hemisphere 56.0
Hippocampus, CA3
nTPM: 58.0
2620 Female, age 94, left hemisphere 60.1
1867 Male, age 76, both hemispheres 59.5
1891 Female, age 85, both hemispheres 58.0
2861 Female, age 67, both hemispheres 57.6
2436 Male, age 74, both hemispheres 56.8
2137 Male, age 80, left hemisphere 56.1
Parahippocampal cortex
nTPM: 57.5
2018 Male, age 76, both hemispheres 59.9
2532 Female, age 72, left hemisphere 59.5
2245 Female, age 91, both hemispheres 58.8
2692 Male, age 74, both hemispheres 57.9
1933 Female, age 85, both hemispheres 57.3
1850 Male, age 80, both hemispheres 57.1
1990 Female, age 91, right hemisphere 57.1
2622 Female, age 67, right hemisphere 56.9
2250 Female, age 67, right hemisphere 56.6
2693 Female, age 94, both hemispheres 53.9
Perirhinal gyrus
nTPM: 56.3
1794 Male, age 80, right hemisphere 57.9
2521 Female, age 94, right hemisphere 57.1
1841 Female, age 85, right hemisphere 55.5
1847 Female, age 91, left hemisphere 55.5
2848 Male, age 76, right hemisphere 55.5
Subiculum
nTPM: 59.8
2042 Male, age 76, both hemispheres 62.2
2438 Female, age 94, left hemisphere 61.3
1901 Male, age 80, both hemispheres 59.9
2619 Male, age 74, both hemispheres 59.6
1977 Female, age 85, both hemispheres 58.8
2729 Female, age 91, right hemisphere 56.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 60.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 60.8
Samples: 197

Max nTPM: 115.3
Min nTPM: 31.6
Std nTPM: 12.2
Median nTPM: 60.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 115.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 100.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 97.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 96.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 94.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 90.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 90.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 83.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 82.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 80.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 80.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.5
FF:10153-102I9 76 years, female 89.9
FF:10169-103B7 60 years, female 47.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 18.3
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.6
Sample A Female 23.4
Sample B Female 15.6
Sample C Male 17.1
Sample D Male 16.9
Entorhinal cortex
nTPM: 17.4
Samples: 4

Max nTPM: 18.1
Min nTPM: 16.6
Sample A Female 18.1
Sample B Female 18.0
Sample C Male 16.8
Sample D Male 16.6
Subiculum
nTPM: 16.9
Samples: 4

Max nTPM: 22.2
Min nTPM: 14.6
Sample A Female 22.2
Sample B Female 15.6
Sample C Male 14.6
Sample D Male 15.2
Ventral hippocampus
nTPM: 17.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 12.8
Sample A Female 16.1
Sample B Female 12.8
Sample C Male 20.7
Sample D Male 20.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 21.4
Sample A Male 23.9
Sample B Male 24.2
Sample C Female 23.8
Sample D Female 21.4
Hippocampal formation
nTPM: 22.8
Samples: 4

Max nTPM: 25.6
Min nTPM: 21.0
Sample A Male 25.6
Sample B Male 22.6
Sample C Female 21.0
Sample D Female 22.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.1
74882206 Antisense, RP_060315_04_E05, Mouse strain C57BL/6J (56 days, male) 10.8
69608414 Antisense, RP_050426_04_A11, Mouse strain C57BL/6J (56 days, male) 7.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.