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EPN2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.6 nTPM
HPA:63.6 nTPM
GTEx:54.4 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:57.7 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.9
2219 Male, age 76, both hemispheres 67.8
1830 Male, age 51, unknown 63.9
1833 Male, age 53, unknown 63.8
2411 Female, age 72, unknown 55.4
2828 Female, age 72, unknown 53.3
2019 Male, age 18, unknown 53.1
2586 Male, age 75, left hemisphere 53.1
1870 Female, age 42, unknown 50.9
2666 Male, age 74, left hemisphere 45.2
1827 Male, age 72, unknown 42.8
Dorsal raphe nucleus
nTPM: 41.0
2750 Male, age 76, both hemispheres 57.0
2016 Female, age 72, unknown 41.2
1828 Male, age 53, unknown 40.3
2047 Male, age 72, unknown 35.9
2298 Female, age 72, unknown 30.7
Inferior colliculus
nTPM: 40.1
1890 Male, age 53, unknown 43.4
2849 Male, age 72, unknown 42.0
1848 Female, age 42, unknown 41.4
2097 Female, age 72, unknown 33.5
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Pedunculopontine tegmental nucleus
nTPM: 45.3
2334 Male, age 80, both hemispheres 49.0
1921 Female, age 85, both hemispheres 45.9
2338 Male, age 61, both hemispheres 41.0
Periaquaductal grey, anterior
nTPM: 44.7
2502 Female, age 75, unknown 52.9
1947 Male, age 18, unknown 40.6
1795 Male, age 51, unknown 40.5
Periaquaductal grey, dorsal
nTPM: 38.9
2464 Female, age 72, unknown 46.5
2850 Male, age 76, both hemispheres 38.8
1831 Male, age 72, unknown 38.2
1840 Male, age 53, unknown 32.2
Periaquaductal grey, lateral
nTPM: 45.2
2272 Male, age 74, both hemispheres 46.3
2140 Male, age 76, both hemispheres 45.2
2053 Male, age 18, unknown 44.2
Pretectal area
nTPM: 45.9
2316 Male, age 76, right hemisphere 57.4
2667 Female, age 75, unknown 56.1
2407 Male, age 75, both hemispheres 52.8
1815 Male, age 53, unknown 52.0
2825 Male, age 18, unknown 45.1
1817 Female, age 42, unknown 45.0
2007 Male, age 72, unknown 43.1
2224 Female, age 72, unknown 41.6
2273 Male, age 74, both hemispheres 38.3
1944 Female, age 72, unknown 37.6
1816 Male, age 51, unknown 36.4
Red nucleus
nTPM: 63.6
1904 Male, age 53, unknown 76.2
1865 Male, age 51, unknown 75.0
2823 Male, age 76, right hemisphere 72.9
2769 Male, age 72, unknown 71.9
2227 Male, age 72, unknown 69.3
2588 Male, age 74, left hemisphere 67.1
2785 Male, age 18, unknown 61.8
2503 Female, age 72, unknown 60.5
1954 Female, age 42, unknown 57.6
2584 Male, age 75, left hemisphere 54.5
1821 Female, age 72, unknown 51.7
2725 Female, age 75, unknown 44.7
Substantia nigra
nTPM: 44.8
2699 Male, age 18, unknown 61.5
2583 Male, age 75, right hemisphere 51.4
2665 Male, age 74, both hemispheres 50.9
1851 Male, age 51, unknown 45.9
1889 Female, age 72, unknown 43.8
2590 Female, age 75, unknown 43.1
2409 Female, age 72, unknown 41.4
2241 Male, age 72, unknown 38.5
1941 Male, age 53, unknown 37.6
1916 Female, age 42, unknown 33.5
Superior colliculus
nTPM: 50.8
1913 Female, age 42, unknown 65.7
1995 Male, age 72, unknown 65.0
1895 Male, age 76, right hemisphere 54.2
2587 Male, age 74, left hemisphere 51.4
2668 Female, age 75, unknown 49.4
2664 Male, age 75, both hemispheres 49.2
1839 Male, age 51, unknown 46.8
1796 Male, age 53, unknown 42.6
2261 Male, age 18, unknown 42.2
2087 Female, age 72, unknown 41.4
Ventral tegmental area
nTPM: 46.6
2223 Female, age 72, unknown 54.1
2410 Female, age 72, unknown 51.3
2218 Male, age 76, both hemispheres 46.5
1942 Male, age 51, unknown 46.1
2021 Male, age 53, unknown 42.8
1915 Female, age 42, unknown 38.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.4
Samples: 139

Max nTPM: 123.7
Min nTPM: 23.9
Std nTPM: 16.8
Median nTPM: 53.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 123.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 118.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 98.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 95.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 90.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 89.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 85.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 83.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 80.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 78.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 78.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 53.2
Min nTPM: 25.0
Sample A Female 53.2
Sample B Female 26.8
Sample C Male 30.2
Sample D Male 25.0
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 26.0
Min nTPM: 19.4
Sample B Female 26.0
Sample C Male 21.5
Sample D Male 19.4
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 36.7
Min nTPM: 24.2
Sample A Female 36.7
Sample B Female 24.2
Sample C Male 27.3
Sample D Male 32.0
Superior colliculi
nTPM: 28.6
Samples: 4

Max nTPM: 36.0
Min nTPM: 22.2
Sample A Female 36.0
Sample B Female 22.2
Sample C Male 26.8
Sample D Male 29.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 60.7
Min nTPM: 54.3
Sample A Male 59.2
Sample B Male 56.4
Sample C Female 54.3
Sample D Female 60.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
68632002 Antisense, RP_050125_01_E06, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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