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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:14.9 nTPM
HPA:14.9 nTPM
GTEx:15.3 nTPM
FANTOM5:48.1 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:46.4 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038790
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Hippocampus
nTPM: 12.6
2621 Female, age 67, right hemisphere 15.7
2148 Female, age 91, left hemisphere 14.4
1855 Male, age 76, left hemisphere 12.6
1898 Male, age 80, left hemisphere 11.8
1911 Female, age 85, right hemisphere 10.9
2529 Female, age 94, left hemisphere 10.5
Dentate gyrus
nTPM: 13.7
2531 Female, age 67, both hemispheres 20.8
2530 Female, age 94, left hemisphere 15.1
1927 Female, age 91, both hemispheres 14.0
2246 Female, age 85, both hemispheres 12.7
2528 Male, age 74, both hemispheres 10.4
2010 Male, age 76, both hemispheres 9.0
Entorhinal gyrus
nTPM: 13.7
2613 Female, age 94, left hemisphere 19.7
2764 Male, age 80, right hemisphere 16.2
2686 Male, age 75, right hemisphere 13.6
1787 Male, age 76, left hemisphere 13.4
1938 Female, age 85, left hemisphere 11.7
2117 Female, age 91, right hemisphere 7.6
Hippocampus, CA1
nTPM: 12.5
2749 Male, age 80, left hemisphere 18.3
1873 Female, age 85, both hemispheres 13.2
2527 Male, age 74, both hemispheres 11.6
2045 Male, age 76, both hemispheres 11.2
2082 Female, age 91, right hemisphere 8.4
Hippocampus, CA2
nTPM: 10.7
1963 Male, age 80, left hemisphere 14.4
1940 Female, age 85, left hemisphere 12.5
2437 Female, age 94, left hemisphere 11.1
2113 Female, age 91, right hemisphere 9.2
1892 Male, age 76, both hemispheres 8.8
2249 Male, age 74, both hemispheres 7.9
Hippocampus, CA3
nTPM: 14.9
2861 Female, age 67, both hemispheres 24.1
2620 Female, age 94, left hemisphere 22.8
2137 Male, age 80, left hemisphere 16.0
1891 Female, age 85, both hemispheres 10.1
2436 Male, age 74, both hemispheres 8.4
1867 Male, age 76, both hemispheres 7.9
Parahippocampal cortex
nTPM: 13.2
2622 Female, age 67, right hemisphere 18.9
2532 Female, age 72, left hemisphere 16.4
2692 Male, age 74, both hemispheres 14.1
2693 Female, age 94, both hemispheres 14.0
1933 Female, age 85, both hemispheres 13.5
2245 Female, age 91, both hemispheres 13.1
1850 Male, age 80, both hemispheres 11.6
2018 Male, age 76, both hemispheres 10.5
2250 Female, age 67, right hemisphere 10.0
1990 Female, age 91, right hemisphere 9.9
Perirhinal gyrus
nTPM: 12.2
1794 Male, age 80, right hemisphere 14.7
1841 Female, age 85, right hemisphere 13.9
2848 Male, age 76, right hemisphere 11.9
1847 Female, age 91, left hemisphere 10.9
2521 Female, age 94, right hemisphere 9.8
Subiculum
nTPM: 11.0
1977 Female, age 85, both hemispheres 12.3
2619 Male, age 74, both hemispheres 12.3
1901 Male, age 80, both hemispheres 10.9
2438 Female, age 94, left hemisphere 10.8
2729 Female, age 91, right hemisphere 10.7
2042 Male, age 76, both hemispheres 9.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.3
Samples: 197

Max nTPM: 25.2
Min nTPM: 6.3
Std nTPM: 3.3
Median nTPM: 15.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 25.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 25.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 23.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 22.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 21.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 21.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 20.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 20.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 20.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 20.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 20.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.1
FF:10153-102I9 76 years, female 62.7
FF:10169-103B7 60 years, female 33.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.1
Samples: 4

Max nTPM: 33.8
Min nTPM: 26.8
Sample A Female 33.8
Sample B Female 31.5
Sample C Male 28.3
Sample D Male 26.8
Entorhinal cortex
nTPM: 34.8
Samples: 4

Max nTPM: 36.7
Min nTPM: 32.8
Sample A Female 36.7
Sample B Female 32.8
Sample C Male 36.4
Sample D Male 33.2
Subiculum
nTPM: 30.0
Samples: 4

Max nTPM: 36.7
Min nTPM: 26.4
Sample A Female 36.7
Sample B Female 26.4
Sample C Male 29.8
Sample D Male 27.2
Ventral hippocampus
nTPM: 29.9
Samples: 4

Max nTPM: 36.0
Min nTPM: 23.4
Sample A Female 25.8
Sample B Female 23.4
Sample C Male 36.0
Sample D Male 34.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 46.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 46.4
Samples: 4

Max nTPM: 54.3
Min nTPM: 41.0
Sample A Male 46.2
Sample B Male 44.0
Sample C Female 41.0
Sample D Female 54.3
Hippocampal formation
nTPM: 38.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 36.9
Sample A Male 36.9
Sample B Male 38.7
Sample C Female 38.6
Sample D Female 39.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
69028318 Antisense, RP_050316_01_A12, Mouse strain C57BL/6J (56 days, male) 6.6
74076084 Antisense, RP_051219_02_G01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.