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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:38.0 nTPM
HPA:38.0 nTPM
GTEx:32.4 nTPM
FANTOM5:88.4 Scaled Tags Per Million
Pig:50.0 nTPM
Mouse:79.9 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA072204
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.0
Sample id Sample description nTPM
Hippocampus
nTPM: 33.2
1898 Male, age 80, left hemisphere 38.5
1855 Male, age 76, left hemisphere 36.1
1911 Female, age 85, right hemisphere 31.9
2148 Female, age 91, left hemisphere 31.8
2529 Female, age 94, left hemisphere 31.1
2621 Female, age 67, right hemisphere 30.0
Dentate gyrus
nTPM: 33.9
1927 Female, age 91, both hemispheres 35.2
2010 Male, age 76, both hemispheres 35.2
2246 Female, age 85, both hemispheres 35.1
2530 Female, age 94, left hemisphere 34.3
2528 Male, age 74, both hemispheres 32.9
2531 Female, age 67, both hemispheres 30.6
Entorhinal gyrus
nTPM: 33.5
1938 Female, age 85, left hemisphere 38.1
2764 Male, age 80, right hemisphere 33.7
2117 Female, age 91, right hemisphere 32.9
1787 Male, age 76, left hemisphere 32.8
2613 Female, age 94, left hemisphere 31.9
2686 Male, age 75, right hemisphere 31.8
Hippocampus, CA1
nTPM: 38.0
2749 Male, age 80, left hemisphere 51.4
2045 Male, age 76, both hemispheres 38.7
1873 Female, age 85, both hemispheres 37.8
2527 Male, age 74, both hemispheres 33.9
2082 Female, age 91, right hemisphere 28.2
Hippocampus, CA2
nTPM: 33.3
1963 Male, age 80, left hemisphere 39.1
1892 Male, age 76, both hemispheres 38.7
1940 Female, age 85, left hemisphere 31.1
2113 Female, age 91, right hemisphere 30.7
2249 Male, age 74, both hemispheres 30.7
2437 Female, age 94, left hemisphere 29.2
Hippocampus, CA3
nTPM: 33.1
2137 Male, age 80, left hemisphere 44.2
1891 Female, age 85, both hemispheres 35.6
1867 Male, age 76, both hemispheres 32.7
2620 Female, age 94, left hemisphere 31.8
2436 Male, age 74, both hemispheres 27.2
2861 Female, age 67, both hemispheres 27.2
Parahippocampal cortex
nTPM: 31.6
1850 Male, age 80, both hemispheres 37.9
1933 Female, age 85, both hemispheres 36.3
2532 Female, age 72, left hemisphere 33.9
2692 Male, age 74, both hemispheres 32.1
1990 Female, age 91, right hemisphere 30.8
2245 Female, age 91, both hemispheres 30.1
2693 Female, age 94, both hemispheres 29.5
2622 Female, age 67, right hemisphere 28.8
2250 Female, age 67, right hemisphere 28.5
2018 Male, age 76, both hemispheres 28.1
Perirhinal gyrus
nTPM: 36.5
1847 Female, age 91, left hemisphere 40.4
1794 Male, age 80, right hemisphere 38.1
1841 Female, age 85, right hemisphere 37.8
2848 Male, age 76, right hemisphere 34.6
2521 Female, age 94, right hemisphere 31.6
Subiculum
nTPM: 32.0
1901 Male, age 80, both hemispheres 36.0
1977 Female, age 85, both hemispheres 35.0
2729 Female, age 91, right hemisphere 31.3
2042 Male, age 76, both hemispheres 30.6
2619 Male, age 74, both hemispheres 30.1
2438 Female, age 94, left hemisphere 28.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.4
Samples: 197

Max nTPM: 50.7
Min nTPM: 12.7
Std nTPM: 5.8
Median nTPM: 31.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 50.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 50.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 49.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 48.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 47.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 46.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 46.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 45.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 44.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 43.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 43.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 88.4
FF:10169-103B7 60 years, female 88.9
FF:10153-102I9 76 years, female 87.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 50.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 50.0
Samples: 4

Max nTPM: 60.1
Min nTPM: 40.3
Sample A Female 60.1
Sample B Female 54.6
Sample C Male 40.3
Sample D Male 44.9
Entorhinal cortex
nTPM: 41.6
Samples: 4

Max nTPM: 44.2
Min nTPM: 36.7
Sample A Female 44.2
Sample B Female 43.6
Sample C Male 42.0
Sample D Male 36.7
Subiculum
nTPM: 40.1
Samples: 4

Max nTPM: 47.6
Min nTPM: 36.4
Sample A Female 47.6
Sample B Female 39.9
Sample C Male 36.5
Sample D Male 36.4
Ventral hippocampus
nTPM: 44.6
Samples: 4

Max nTPM: 48.3
Min nTPM: 36.6
Sample A Female 48.3
Sample B Female 36.6
Sample C Male 46.2
Sample D Male 47.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 79.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.0
Samples: 4

Max nTPM: 73.1
Min nTPM: 63.5
Sample A Male 63.5
Sample B Male 64.4
Sample C Female 71.0
Sample D Female 73.1
Hippocampal formation
nTPM: 79.9
Samples: 4

Max nTPM: 94.4
Min nTPM: 71.0
Sample A Male 72.7
Sample B Male 81.6
Sample C Female 94.4
Sample D Female 71.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
532691 Antisense, RP_040825_01_E02, Mouse strain C57BL/6J (56 days, male) 5.1

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