ABOUTMENU
HELP
NEWS
LLGL2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:6.0 nTPM
HPA:6.0 nTPM
GTEx:1.9 nTPM
FANTOM5:9.0 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:0.4 nTPM
Allen mouse:2.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022913
Glial cells Medium
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.3
2289 Male, age 61, right hemisphere 2.1
2288 Male, age 75, left hemisphere 1.8
2481 Female, age 94, left hemisphere 1.8
1781 Male, age 74, unknown 1.5
2846 Female, age 79, unknown 1.3
1854 Male, age 80, left hemisphere 1.0
1857 Female, age 85, left hemisphere 0.6
2290 Female, age 72, unknown 0.6
Claustrum
nTPM: 2.8
2292 Female, age 85, both hemispheres 4.0
1956 Male, age 74, unknown 3.1
2568 Male, age 61, both hemispheres 2.9
2198 Male, age 80, both hemispheres 2.8
2284 Female, age 91, both hemispheres 2.8
2392 Female, age 94, both hemispheres 2.5
2491 Male, age 75, both hemispheres 2.5
2196 Female, age 79, unknown 2.4
2645 Female, age 72, unknown 2.2
Globus pallidus, externus
nTPM: 6.0
2567 Female, age 72, unknown 9.9
2646 Male, age 61, right hemisphere 6.7
2772 Female, age 79, unknown 5.0
1996 Male, age 80, right hemisphere 4.3
2395 Male, age 75, both hemispheres 3.9
Globus pallidus, internus
nTPM: 4.8
2111 Female, age 85, right hemisphere 7.1
2566 Female, age 72, unknown 5.9
2778 Female, age 91, both hemispheres 5.3
1818 Male, age 74, unknown 5.0
2037 Male, age 80, right hemisphere 4.2
2287 Male, age 75, right hemisphere 3.6
2483 Female, age 94, right hemisphere 2.9
Nucleus accumbens
nTPM: 1.5
2732 Male, age 80, right hemisphere 2.6
2391 Female, age 94, left hemisphere 2.2
2698 Female, age 72, unknown 2.0
2286 Male, age 75, left hemisphere 1.4
2824 Male, age 61, right hemisphere 1.3
1806 Female, age 85, left hemisphere 1.2
1783 Male, age 74, unknown 0.8
1856 Female, age 91, right hemisphere 0.2
Nucleus basalis of Meynert
nTPM: 3.3
2569 Male, age 61, both hemispheres 6.2
2821 Male, age 75, both hemispheres 2.6
2484 Female, age 94, left hemisphere 2.3
2393 Male, age 80, right hemisphere 1.9
Nucleus of the diagonal band
nTPM: 1.1
2029 Male, age 61, right hemisphere 2.5
2195 Female, age 85, both hemispheres 1.4
1812 Female, age 91, both hemispheres 0.8
1979 Male, age 74, unknown 0.7
2775 Male, age 80, right hemisphere 0.2
Olfactory tubercle
nTPM: 1.0
2856 Male, age 75, right hemisphere 1.3
2487 Female, age 94, left hemisphere 1.0
1998 Female, age 91, both hemispheres 0.9
1846 Male, age 80, right hemisphere 0.7
Putamen
nTPM: 1.7
2647 Male, age 75, left hemisphere 2.7
1829 Male, age 74, unknown 2.5
2489 Female, age 72, unknown 2.1
2466 Female, age 79, unknown 2.0
2482 Female, age 94, left hemisphere 1.6
1937 Female, age 91, right hemisphere 0.9
1838 Male, age 80, right hemisphere 0.6
Septal nuclei
nTPM: 1.3
2394 Male, age 61, left hemisphere 2.1
2199 Male, age 80, right hemisphere 1.9
2059 Female, age 85, both hemispheres 1.7
2629 Female, age 94, right hemisphere 1.3
1960 Male, age 74, unknown 0.8
2031 Female, age 72, unknown 0.7
2009 Female, age 91, both hemispheres 0.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.6
Samples: 246

Max nTPM: 6.5
Min nTPM: 0.1
Std nTPM: 0.9
Median nTPM: 1.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 6.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 5.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 5.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 4.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 4.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 4.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 3.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 3.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 3.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 3.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.2
Samples: 246

Max nTPM: 7.5
Min nTPM: 0.1
Std nTPM: 0.8
Median nTPM: 1.0
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 7.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 6.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 4.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 4.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 3.7
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 3.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 3.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 3.1
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 3.0
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 2.7
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 2.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 1.9
Samples: 205

Max nTPM: 7.1
Min nTPM: 0.3
Std nTPM: 0.9
Median nTPM: 1.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 7.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 6.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 5.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 4.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 4.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 4.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 3.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 3.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 3.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.4
FF:10164-103B2 76 years, female 3.4
Globus pallidus
Scaled Tags Per Million: 9.0
FF:10161-103A8 76 years, female 10.2
FF:10175-103C4 60 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 2.3
FF:10037-101F1 23-56 years, mixed 2.3
Putamen
Scaled Tags Per Million: 1.0
FF:10176-103C5 60 years, female 1.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Caudate
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.3
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.2
Sample D Male 0.3
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.5
Sample D Male 0.2
Ventral pallidum
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.5
Sample D Female 0.3
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 0.3
Sample C Female 0.5
Sample D Female 0.4
Ventral forebrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
68443525 Antisense, RP_050111_02_B09, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 2.3
68443525 Antisense, RP_050111_02_B09, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.