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ARHGEF10L
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.5 nTPM
HPA:18.5 nTPM
GTEx:12.3 nTPM
FANTOM5:17.7 Scaled Tags Per Million
Pig:13.3 nTPM
Mouse:16.8 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
2586 Male, age 75, left hemisphere 19.0
2219 Male, age 76, both hemispheres 18.6
2828 Female, age 72, unknown 17.6
2666 Male, age 74, left hemisphere 15.2
1827 Male, age 72, unknown 14.0
2411 Female, age 72, unknown 11.4
2019 Male, age 18, unknown 11.3
1830 Male, age 51, unknown 9.7
1870 Female, age 42, unknown 9.6
1833 Male, age 53, unknown 9.5
Dorsal raphe nucleus
nTPM: 13.6
2047 Male, age 72, unknown 16.6
1828 Male, age 53, unknown 15.6
2016 Female, age 72, unknown 13.0
2298 Female, age 72, unknown 13.0
2750 Male, age 76, both hemispheres 9.7
Inferior colliculus
nTPM: 11.7
1848 Female, age 42, unknown 13.1
1890 Male, age 53, unknown 11.5
2849 Male, age 72, unknown 11.5
2097 Female, age 72, unknown 10.9
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Pedunculopontine tegmental nucleus
nTPM: 11.5
1921 Female, age 85, both hemispheres 13.8
2334 Male, age 80, both hemispheres 10.8
2338 Male, age 61, both hemispheres 9.9
Periaquaductal grey, anterior
nTPM: 18.5
2502 Female, age 75, unknown 19.0
1795 Male, age 51, unknown 18.3
1947 Male, age 18, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 12.4
2464 Female, age 72, unknown 13.5
1831 Male, age 72, unknown 13.1
1840 Male, age 53, unknown 12.6
2850 Male, age 76, both hemispheres 10.6
Periaquaductal grey, lateral
nTPM: 14.3
2140 Male, age 76, both hemispheres 16.2
2053 Male, age 18, unknown 13.6
2272 Male, age 74, both hemispheres 13.2
Pretectal area
nTPM: 14.3
1944 Female, age 72, unknown 17.7
1816 Male, age 51, unknown 17.6
2316 Male, age 76, right hemisphere 16.0
2007 Male, age 72, unknown 15.2
2667 Female, age 75, unknown 15.1
2825 Male, age 18, unknown 14.2
1817 Female, age 42, unknown 13.6
2273 Male, age 74, both hemispheres 12.3
1815 Male, age 53, unknown 12.2
2407 Male, age 75, both hemispheres 12.1
2224 Female, age 72, unknown 10.8
Red nucleus
nTPM: 11.6
2503 Female, age 72, unknown 13.6
2725 Female, age 75, unknown 13.4
2588 Male, age 74, left hemisphere 12.9
2769 Male, age 72, unknown 12.3
2227 Male, age 72, unknown 12.0
1954 Female, age 42, unknown 11.5
2785 Male, age 18, unknown 11.2
2823 Male, age 76, right hemisphere 11.0
1865 Male, age 51, unknown 10.8
2584 Male, age 75, left hemisphere 10.4
1821 Female, age 72, unknown 9.9
1904 Male, age 53, unknown 9.6
Substantia nigra
nTPM: 12.0
1941 Male, age 53, unknown 17.7
1916 Female, age 42, unknown 14.7
2665 Male, age 74, both hemispheres 12.5
2699 Male, age 18, unknown 12.1
2583 Male, age 75, right hemisphere 11.9
1889 Female, age 72, unknown 11.7
2590 Female, age 75, unknown 11.6
1851 Male, age 51, unknown 11.5
2409 Female, age 72, unknown 8.7
2241 Male, age 72, unknown 7.3
Superior colliculus
nTPM: 12.9
2087 Female, age 72, unknown 16.3
2664 Male, age 75, both hemispheres 16.1
2261 Male, age 18, unknown 15.9
1796 Male, age 53, unknown 14.1
1839 Male, age 51, unknown 12.2
1995 Male, age 72, unknown 12.0
1895 Male, age 76, right hemisphere 11.0
2587 Male, age 74, left hemisphere 11.0
1913 Female, age 42, unknown 10.6
2668 Female, age 75, unknown 10.0
Ventral tegmental area
nTPM: 11.4
1942 Male, age 51, unknown 14.0
1915 Female, age 42, unknown 12.5
2410 Female, age 72, unknown 11.6
2218 Male, age 76, both hemispheres 11.0
2021 Male, age 53, unknown 10.9
2223 Female, age 72, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 29.1
Min nTPM: 3.3
Std nTPM: 4.6
Median nTPM: 12.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 22.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 20.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 20.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 19.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 19.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 18.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.7
FF:10158-103A5 76 years, female 17.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.3
Pig sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 9.8
Sample A Female 12.1
Sample B Female 9.8
Sample C Male 14.2
Sample D Male 15.4
Periaqueductal gray
nTPM: 10.2
Samples: 3

Max nTPM: 11.7
Min nTPM: 8.7
Sample B Female 10.1
Sample C Male 11.7
Sample D Male 8.7
Substantia nigra
nTPM: 12.6
Samples: 4

Max nTPM: 14.5
Min nTPM: 9.5
Sample A Female 14.5
Sample B Female 12.1
Sample C Male 14.4
Sample D Male 9.5
Superior colliculi
nTPM: 13.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.5
Sample A Female 14.4
Sample B Female 11.5
Sample C Male 14.4
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.3
Sample A Male 17.2
Sample B Male 17.9
Sample C Female 16.7
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
75831723 Antisense, RP_060601_02_A08, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.