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VPS9D1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:25.4 nTPM
HPA:25.4 nTPM
GTEx:26.2 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:22.1 nTPM
Allen mouse:4.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007847Antibody HPA023620
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.4
Sample id Sample description nTPM
Hippocampus
nTPM: 20.4
2621 Female, age 67, right hemisphere 23.8
1855 Male, age 76, left hemisphere 21.5
1911 Female, age 85, right hemisphere 19.7
2529 Female, age 94, left hemisphere 19.7
2148 Female, age 91, left hemisphere 19.6
1898 Male, age 80, left hemisphere 17.9
Dentate gyrus
nTPM: 19.2
2531 Female, age 67, both hemispheres 21.7
1927 Female, age 91, both hemispheres 20.1
2246 Female, age 85, both hemispheres 20.0
2010 Male, age 76, both hemispheres 18.1
2528 Male, age 74, both hemispheres 18.1
2530 Female, age 94, left hemisphere 17.4
Entorhinal gyrus
nTPM: 25.4
2613 Female, age 94, left hemisphere 32.9
2686 Male, age 75, right hemisphere 30.2
2764 Male, age 80, right hemisphere 28.4
1787 Male, age 76, left hemisphere 24.1
1938 Female, age 85, left hemisphere 20.1
2117 Female, age 91, right hemisphere 16.9
Hippocampus, CA1
nTPM: 19.3
2082 Female, age 91, right hemisphere 21.7
2527 Male, age 74, both hemispheres 19.5
1873 Female, age 85, both hemispheres 18.7
2045 Male, age 76, both hemispheres 18.4
2749 Male, age 80, left hemisphere 18.2
Hippocampus, CA2
nTPM: 20.5
2437 Female, age 94, left hemisphere 24.2
2113 Female, age 91, right hemisphere 21.0
1892 Male, age 76, both hemispheres 20.6
1940 Female, age 85, left hemisphere 20.5
1963 Male, age 80, left hemisphere 19.2
2249 Male, age 74, both hemispheres 17.4
Hippocampus, CA3
nTPM: 20.0
2861 Female, age 67, both hemispheres 23.7
2436 Male, age 74, both hemispheres 20.3
1867 Male, age 76, both hemispheres 19.6
2137 Male, age 80, left hemisphere 19.6
2620 Female, age 94, left hemisphere 19.3
1891 Female, age 85, both hemispheres 17.6
Parahippocampal cortex
nTPM: 24.6
2622 Female, age 67, right hemisphere 33.3
2693 Female, age 94, both hemispheres 27.4
2245 Female, age 91, both hemispheres 25.6
2692 Male, age 74, both hemispheres 24.6
2018 Male, age 76, both hemispheres 24.0
2532 Female, age 72, left hemisphere 23.3
1850 Male, age 80, both hemispheres 23.1
2250 Female, age 67, right hemisphere 21.9
1933 Female, age 85, both hemispheres 21.7
1990 Female, age 91, right hemisphere 21.6
Perirhinal gyrus
nTPM: 24.1
2848 Male, age 76, right hemisphere 25.9
2521 Female, age 94, right hemisphere 25.3
1794 Male, age 80, right hemisphere 24.5
1847 Female, age 91, left hemisphere 23.0
1841 Female, age 85, right hemisphere 21.8
Subiculum
nTPM: 20.4
2438 Female, age 94, left hemisphere 24.4
2619 Male, age 74, both hemispheres 24.3
1977 Female, age 85, both hemispheres 19.4
2042 Male, age 76, both hemispheres 19.2
2729 Female, age 91, right hemisphere 17.7
1901 Male, age 80, both hemispheres 17.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.2
Samples: 197

Max nTPM: 43.9
Min nTPM: 10.5
Std nTPM: 6.6
Median nTPM: 25.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 43.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 43.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 42.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 41.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 41.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 41.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 40.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 38.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 38.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 37.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 37.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 21.8
FF:10153-102I9 76 years, female 27.0
FF:10169-103B7 60 years, female 16.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 7.1
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.4
Sample A Female 7.3
Sample B Female 7.1
Sample C Male 7.6
Sample D Male 6.4
Entorhinal cortex
nTPM: 8.8
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.2
Sample A Female 8.8
Sample B Female 8.2
Sample C Male 9.8
Sample D Male 8.5
Subiculum
nTPM: 8.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.0
Sample A Female 10.2
Sample B Female 8.1
Sample C Male 8.7
Sample D Male 7.0
Ventral hippocampus
nTPM: 8.4
Samples: 4

Max nTPM: 10.6
Min nTPM: 6.8
Sample A Female 7.9
Sample B Female 6.8
Sample C Male 10.6
Sample D Male 8.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.1
Samples: 4

Max nTPM: 24.7
Min nTPM: 19.6
Sample A Male 23.0
Sample B Male 24.7
Sample C Female 19.6
Sample D Female 21.2
Hippocampal formation
nTPM: 18.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 16.3
Sample A Male 20.7
Sample B Male 18.4
Sample C Female 16.3
Sample D Female 19.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.7
68844624 Antisense, RP_050222_02_A12, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.