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RAB7A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:142.0 nTPM
HPA:142.0 nTPM
GTEx:189.5 nTPM
FANTOM5:348.6 Scaled Tags Per Million
Pig:224.1 nTPM
Mouse:297.4 nTPM
Allen mouse:12.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 142.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.8
1833 Male, age 53, unknown 126.5
1870 Female, age 42, unknown 122.0
1830 Male, age 51, unknown 120.6
2219 Male, age 76, both hemispheres 120.5
2019 Male, age 18, unknown 120.3
2828 Female, age 72, unknown 119.6
1827 Male, age 72, unknown 116.8
2411 Female, age 72, unknown 111.4
2666 Male, age 74, left hemisphere 104.2
2586 Male, age 75, left hemisphere 86.3
Dorsal raphe nucleus
nTPM: 119.2
2750 Male, age 76, both hemispheres 131.2
1828 Male, age 53, unknown 122.7
2047 Male, age 72, unknown 121.0
2016 Female, age 72, unknown 111.1
2298 Female, age 72, unknown 110.2
Inferior colliculus
nTPM: 112.1
2097 Female, age 72, unknown 116.1
2849 Male, age 72, unknown 112.0
1890 Male, age 53, unknown 111.0
1848 Female, age 42, unknown 109.5
Median raphe nucleus
nTPM: 136.3
2220 Male, age 76, midline 136.3
Pedunculopontine tegmental nucleus
nTPM: 142.0
2338 Male, age 61, both hemispheres 157.9
2334 Male, age 80, both hemispheres 149.5
1921 Female, age 85, both hemispheres 118.7
Periaquaductal grey, anterior
nTPM: 114.0
1947 Male, age 18, unknown 120.8
2502 Female, age 75, unknown 114.7
1795 Male, age 51, unknown 106.4
Periaquaductal grey, dorsal
nTPM: 122.0
2850 Male, age 76, both hemispheres 145.1
2464 Female, age 72, unknown 121.2
1831 Male, age 72, unknown 113.7
1840 Male, age 53, unknown 108.0
Periaquaductal grey, lateral
nTPM: 134.1
2272 Male, age 74, both hemispheres 152.7
2140 Male, age 76, both hemispheres 127.8
2053 Male, age 18, unknown 121.8
Pretectal area
nTPM: 125.8
2273 Male, age 74, both hemispheres 140.0
1817 Female, age 42, unknown 133.3
1815 Male, age 53, unknown 132.1
2667 Female, age 75, unknown 132.1
2407 Male, age 75, both hemispheres 126.0
1944 Female, age 72, unknown 125.7
1816 Male, age 51, unknown 123.4
2007 Male, age 72, unknown 122.6
2224 Female, age 72, unknown 119.3
2316 Male, age 76, right hemisphere 117.0
2825 Male, age 18, unknown 111.9
Red nucleus
nTPM: 120.6
1821 Female, age 72, unknown 136.4
2823 Male, age 76, right hemisphere 135.3
1865 Male, age 51, unknown 129.4
1954 Female, age 42, unknown 128.6
2725 Female, age 75, unknown 127.9
1904 Male, age 53, unknown 121.2
2785 Male, age 18, unknown 119.2
2227 Male, age 72, unknown 119.1
2769 Male, age 72, unknown 116.3
2503 Female, age 72, unknown 114.0
2584 Male, age 75, left hemisphere 106.1
2588 Male, age 74, left hemisphere 93.6
Substantia nigra
nTPM: 126.6
1916 Female, age 42, unknown 149.1
1851 Male, age 51, unknown 134.8
2699 Male, age 18, unknown 133.5
2409 Female, age 72, unknown 132.6
2241 Male, age 72, unknown 130.0
1941 Male, age 53, unknown 129.8
1889 Female, age 72, unknown 128.7
2590 Female, age 75, unknown 112.4
2583 Male, age 75, right hemisphere 107.9
2665 Male, age 74, both hemispheres 107.2
Superior colliculus
nTPM: 115.4
2587 Male, age 74, left hemisphere 127.0
2087 Female, age 72, unknown 121.7
1995 Male, age 72, unknown 119.3
1895 Male, age 76, right hemisphere 118.2
2261 Male, age 18, unknown 118.2
1913 Female, age 42, unknown 118.0
2668 Female, age 75, unknown 113.4
1796 Male, age 53, unknown 112.8
1839 Male, age 51, unknown 112.4
2664 Male, age 75, both hemispheres 93.0
Ventral tegmental area
nTPM: 126.5
2218 Male, age 76, both hemispheres 137.6
2410 Female, age 72, unknown 134.0
1915 Female, age 42, unknown 132.7
2223 Female, age 72, unknown 125.0
2021 Male, age 53, unknown 115.2
1942 Male, age 51, unknown 114.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 189.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 189.5
Samples: 139

Max nTPM: 316.1
Min nTPM: 132.7
Std nTPM: 28.6
Median nTPM: 182.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 316.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 291.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 257.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 242.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 242.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 240.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 239.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 237.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 235.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 228.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 227.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 348.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 348.6
FF:10158-103A5 76 years, female 348.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 224.1
Pig sample Sample description nTPM
Midbrain
nTPM: 224.1
Samples: 4

Max nTPM: 320.9
Min nTPM: 156.6
Sample A Female 320.9
Sample B Female 187.8
Sample C Male 231.2
Sample D Male 156.6
Periaqueductal gray
nTPM: 161.9
Samples: 3

Max nTPM: 172.0
Min nTPM: 151.1
Sample B Female 162.5
Sample C Male 172.0
Sample D Male 151.1
Substantia nigra
nTPM: 210.8
Samples: 4

Max nTPM: 240.1
Min nTPM: 168.1
Sample A Female 240.1
Sample B Female 168.1
Sample C Male 227.5
Sample D Male 207.5
Superior colliculi
nTPM: 211.5
Samples: 4

Max nTPM: 242.3
Min nTPM: 167.8
Sample A Female 227.0
Sample B Female 167.8
Sample C Male 242.3
Sample D Male 208.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 297.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 297.4
Samples: 4

Max nTPM: 301.2
Min nTPM: 293.5
Sample A Male 298.6
Sample B Male 293.5
Sample C Female 296.3
Sample D Female 301.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
532633 Antisense, RP_040810_02_G08, Mouse strain C57BL/6J (56 days, male) 12.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.