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KIFAP3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:40.1 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:127.1 nTPM
Mouse:158.1 nTPM
Allen mouse:14.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.7
2019 Male, age 18, unknown 44.2
1827 Male, age 72, unknown 39.3
2411 Female, age 72, unknown 38.9
2219 Male, age 76, both hemispheres 37.4
1870 Female, age 42, unknown 34.3
2666 Male, age 74, left hemisphere 33.5
1833 Male, age 53, unknown 32.3
2828 Female, age 72, unknown 31.0
1830 Male, age 51, unknown 30.9
2586 Male, age 75, left hemisphere 25.5
Dorsal raphe nucleus
nTPM: 38.4
2298 Female, age 72, unknown 45.3
2047 Male, age 72, unknown 40.8
1828 Male, age 53, unknown 37.3
2750 Male, age 76, both hemispheres 37.3
2016 Female, age 72, unknown 31.4
Inferior colliculus
nTPM: 37.5
2097 Female, age 72, unknown 43.6
1848 Female, age 42, unknown 38.8
1890 Male, age 53, unknown 34.4
2849 Male, age 72, unknown 33.3
Median raphe nucleus
nTPM: 43.3
2220 Male, age 76, midline 43.3
Pedunculopontine tegmental nucleus
nTPM: 37.6
1921 Female, age 85, both hemispheres 40.5
2334 Male, age 80, both hemispheres 39.8
2338 Male, age 61, both hemispheres 32.4
Periaquaductal grey, anterior
nTPM: 36.0
1947 Male, age 18, unknown 38.1
2502 Female, age 75, unknown 35.5
1795 Male, age 51, unknown 34.4
Periaquaductal grey, dorsal
nTPM: 33.8
1840 Male, age 53, unknown 37.0
2850 Male, age 76, both hemispheres 34.4
2464 Female, age 72, unknown 33.4
1831 Male, age 72, unknown 30.3
Periaquaductal grey, lateral
nTPM: 34.0
2272 Male, age 74, both hemispheres 40.6
2140 Male, age 76, both hemispheres 31.7
2053 Male, age 18, unknown 29.8
Pretectal area
nTPM: 40.1
1816 Male, age 51, unknown 49.9
2007 Male, age 72, unknown 48.1
1817 Female, age 42, unknown 47.6
1944 Female, age 72, unknown 47.6
2224 Female, age 72, unknown 41.3
2273 Male, age 74, both hemispheres 41.3
1815 Male, age 53, unknown 40.3
2667 Female, age 75, unknown 37.4
2825 Male, age 18, unknown 30.5
2316 Male, age 76, right hemisphere 29.5
2407 Male, age 75, both hemispheres 27.3
Red nucleus
nTPM: 32.1
1821 Female, age 72, unknown 41.2
2785 Male, age 18, unknown 38.0
2725 Female, age 75, unknown 36.9
1954 Female, age 42, unknown 33.9
2588 Male, age 74, left hemisphere 31.1
2503 Female, age 72, unknown 30.5
1904 Male, age 53, unknown 30.0
2227 Male, age 72, unknown 29.7
1865 Male, age 51, unknown 29.5
2769 Male, age 72, unknown 29.2
2823 Male, age 76, right hemisphere 28.6
2584 Male, age 75, left hemisphere 26.4
Substantia nigra
nTPM: 42.6
1916 Female, age 42, unknown 55.0
1941 Male, age 53, unknown 52.2
2241 Male, age 72, unknown 51.6
1851 Male, age 51, unknown 46.2
1889 Female, age 72, unknown 46.1
2409 Female, age 72, unknown 42.1
2590 Female, age 75, unknown 36.2
2665 Male, age 74, both hemispheres 35.0
2699 Male, age 18, unknown 33.1
2583 Male, age 75, right hemisphere 28.3
Superior colliculus
nTPM: 35.2
1895 Male, age 76, right hemisphere 44.0
2087 Female, age 72, unknown 40.9
2261 Male, age 18, unknown 38.9
2587 Male, age 74, left hemisphere 37.2
2668 Female, age 75, unknown 36.3
1796 Male, age 53, unknown 36.2
1839 Male, age 51, unknown 34.9
1913 Female, age 42, unknown 29.2
1995 Male, age 72, unknown 27.6
2664 Male, age 75, both hemispheres 27.0
Ventral tegmental area
nTPM: 39.5
2410 Female, age 72, unknown 46.7
2218 Male, age 76, both hemispheres 45.1
1915 Female, age 42, unknown 44.2
1942 Male, age 51, unknown 34.6
2223 Female, age 72, unknown 33.2
2021 Male, age 53, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 139

Max nTPM: 134.0
Min nTPM: 16.9
Std nTPM: 20.5
Median nTPM: 33.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 134.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 128.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 117.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 107.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 83.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 81.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 76.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 73.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 70.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 69.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.3
FF:10158-103A5 76 years, female 53.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.1
Pig sample Sample description nTPM
Midbrain
nTPM: 112.7
Samples: 4

Max nTPM: 133.7
Min nTPM: 97.5
Sample A Female 97.5
Sample B Female 106.0
Sample C Male 133.7
Sample D Male 113.5
Periaqueductal gray
nTPM: 87.3
Samples: 3

Max nTPM: 91.6
Min nTPM: 84.9
Sample B Female 85.4
Sample C Male 91.6
Sample D Male 84.9
Substantia nigra
nTPM: 97.8
Samples: 4

Max nTPM: 156.9
Min nTPM: 57.9
Sample A Female 156.9
Sample B Female 77.2
Sample C Male 99.2
Sample D Male 57.9
Superior colliculi
nTPM: 127.1
Samples: 4

Max nTPM: 157.9
Min nTPM: 79.4
Sample A Female 157.9
Sample B Female 79.4
Sample C Male 154.3
Sample D Male 116.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 158.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 158.1
Samples: 4

Max nTPM: 166.0
Min nTPM: 147.6
Sample A Male 147.6
Sample B Male 163.6
Sample C Female 166.0
Sample D Female 155.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.1
67765709 Antisense, RP_040916_01_E02, Mouse strain C57BL/6J (56 days, male) 14.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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