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TRAF4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA:17.7 nTPM
GTEx:18.4 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:6.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2411 Female, age 72, unknown 17.8
2019 Male, age 18, unknown 17.6
2586 Male, age 75, left hemisphere 16.9
1833 Male, age 53, unknown 16.6
1830 Male, age 51, unknown 16.4
2828 Female, age 72, unknown 16.1
1870 Female, age 42, unknown 15.4
2219 Male, age 76, both hemispheres 14.4
1827 Male, age 72, unknown 14.1
2666 Male, age 74, left hemisphere 13.6
Dorsal raphe nucleus
nTPM: 14.8
2750 Male, age 76, both hemispheres 17.0
1828 Male, age 53, unknown 15.2
2016 Female, age 72, unknown 15.2
2047 Male, age 72, unknown 13.5
2298 Female, age 72, unknown 13.0
Inferior colliculus
nTPM: 14.1
1890 Male, age 53, unknown 15.2
1848 Female, age 42, unknown 13.9
2097 Female, age 72, unknown 13.8
2849 Male, age 72, unknown 13.4
Median raphe nucleus
nTPM: 12.5
2220 Male, age 76, midline 12.5
Pedunculopontine tegmental nucleus
nTPM: 14.2
2334 Male, age 80, both hemispheres 14.6
1921 Female, age 85, both hemispheres 14.0
2338 Male, age 61, both hemispheres 13.8
Periaquaductal grey, anterior
nTPM: 15.5
2502 Female, age 75, unknown 16.4
1795 Male, age 51, unknown 15.4
1947 Male, age 18, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 13.8
2464 Female, age 72, unknown 15.6
2850 Male, age 76, both hemispheres 14.4
1831 Male, age 72, unknown 13.4
1840 Male, age 53, unknown 11.7
Periaquaductal grey, lateral
nTPM: 15.5
2140 Male, age 76, both hemispheres 16.5
2272 Male, age 74, both hemispheres 16.1
2053 Male, age 18, unknown 14.0
Pretectal area
nTPM: 14.9
2316 Male, age 76, right hemisphere 18.8
2667 Female, age 75, unknown 16.7
1815 Male, age 53, unknown 15.4
2407 Male, age 75, both hemispheres 15.1
2273 Male, age 74, both hemispheres 14.9
1817 Female, age 42, unknown 14.7
2007 Male, age 72, unknown 14.6
2825 Male, age 18, unknown 14.2
2224 Female, age 72, unknown 13.7
1816 Male, age 51, unknown 12.9
1944 Female, age 72, unknown 12.7
Red nucleus
nTPM: 17.7
1904 Male, age 53, unknown 19.4
2769 Male, age 72, unknown 19.4
2227 Male, age 72, unknown 19.2
2823 Male, age 76, right hemisphere 19.2
1865 Male, age 51, unknown 18.4
2588 Male, age 74, left hemisphere 18.1
2785 Male, age 18, unknown 17.8
1954 Female, age 42, unknown 17.6
2503 Female, age 72, unknown 16.9
1821 Female, age 72, unknown 16.4
2584 Male, age 75, left hemisphere 15.5
2725 Female, age 75, unknown 14.5
Substantia nigra
nTPM: 14.3
2699 Male, age 18, unknown 16.9
2583 Male, age 75, right hemisphere 15.1
2665 Male, age 74, both hemispheres 14.8
1851 Male, age 51, unknown 14.7
2409 Female, age 72, unknown 14.7
2590 Female, age 75, unknown 14.4
1889 Female, age 72, unknown 13.7
2241 Male, age 72, unknown 13.3
1941 Male, age 53, unknown 13.2
1916 Female, age 42, unknown 12.2
Superior colliculus
nTPM: 15.5
1913 Female, age 42, unknown 19.0
1995 Male, age 72, unknown 18.5
1895 Male, age 76, right hemisphere 16.4
1839 Male, age 51, unknown 15.3
2668 Female, age 75, unknown 15.2
1796 Male, age 53, unknown 14.8
2261 Male, age 18, unknown 14.1
2087 Female, age 72, unknown 13.9
2587 Male, age 74, left hemisphere 13.9
2664 Male, age 75, both hemispheres 13.8
Ventral tegmental area
nTPM: 15.0
2410 Female, age 72, unknown 16.4
2223 Female, age 72, unknown 15.5
1942 Male, age 51, unknown 15.4
2021 Male, age 53, unknown 14.9
2218 Male, age 76, both hemispheres 14.2
1915 Female, age 42, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.4
Samples: 139

Max nTPM: 37.5
Min nTPM: 5.7
Std nTPM: 6.1
Median nTPM: 17.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 37.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 34.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 33.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 33.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 32.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 31.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 29.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.1
Sample A Female 4.8
Sample B Female 3.1
Sample C Male 3.2
Sample D Male 3.3
Periaqueductal gray
nTPM: 3.4
Samples: 3

Max nTPM: 3.6
Min nTPM: 3.1
Sample B Female 3.6
Sample C Male 3.1
Sample D Male 3.6
Substantia nigra
nTPM: 3.6
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.0
Sample A Female 4.0
Sample B Female 3.2
Sample C Male 3.0
Sample D Male 4.3
Superior colliculi
nTPM: 3.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.0
Sample A Female 4.2
Sample B Female 4.8
Sample C Male 3.0
Sample D Male 3.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.4
Sample A Male 6.1
Sample B Male 5.4
Sample C Female 5.4
Sample D Female 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.