ABOUTMENU
HELP
NEWS
MCAM
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.1 nTPM
HPA:43.1 nTPM
GTEx:33.0 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:29.3 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.3
2828 Female, age 72, unknown 45.7
2666 Male, age 74, left hemisphere 45.0
2019 Male, age 18, unknown 39.0
1827 Male, age 72, unknown 38.8
2411 Female, age 72, unknown 37.6
1870 Female, age 42, unknown 37.4
1830 Male, age 51, unknown 36.6
1833 Male, age 53, unknown 35.7
2586 Male, age 75, left hemisphere 34.2
2219 Male, age 76, both hemispheres 32.8
Dorsal raphe nucleus
nTPM: 39.4
2047 Male, age 72, unknown 45.0
1828 Male, age 53, unknown 44.2
2750 Male, age 76, both hemispheres 41.8
2298 Female, age 72, unknown 33.3
2016 Female, age 72, unknown 32.5
Inferior colliculus
nTPM: 33.3
2097 Female, age 72, unknown 37.1
1890 Male, age 53, unknown 34.4
1848 Female, age 42, unknown 31.3
2849 Male, age 72, unknown 30.6
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 36.3
2334 Male, age 80, both hemispheres 37.9
1921 Female, age 85, both hemispheres 35.8
2338 Male, age 61, both hemispheres 35.2
Periaquaductal grey, anterior
nTPM: 37.4
1947 Male, age 18, unknown 42.9
1795 Male, age 51, unknown 37.6
2502 Female, age 75, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 30.2
2464 Female, age 72, unknown 35.5
1831 Male, age 72, unknown 30.2
2850 Male, age 76, both hemispheres 28.7
1840 Male, age 53, unknown 26.5
Periaquaductal grey, lateral
nTPM: 31.9
2053 Male, age 18, unknown 35.7
2272 Male, age 74, both hemispheres 31.9
2140 Male, age 76, both hemispheres 27.9
Pretectal area
nTPM: 34.2
1817 Female, age 42, unknown 43.8
2007 Male, age 72, unknown 39.9
2316 Male, age 76, right hemisphere 38.7
1815 Male, age 53, unknown 36.8
1816 Male, age 51, unknown 34.0
2825 Male, age 18, unknown 32.8
2224 Female, age 72, unknown 32.5
1944 Female, age 72, unknown 31.7
2407 Male, age 75, both hemispheres 30.7
2667 Female, age 75, unknown 28.1
2273 Male, age 74, both hemispheres 27.6
Red nucleus
nTPM: 43.1
2823 Male, age 76, right hemisphere 50.5
1954 Female, age 42, unknown 47.7
2503 Female, age 72, unknown 47.2
1904 Male, age 53, unknown 45.2
1865 Male, age 51, unknown 43.7
1821 Female, age 72, unknown 43.0
2227 Male, age 72, unknown 41.2
2588 Male, age 74, left hemisphere 41.0
2785 Male, age 18, unknown 40.6
2769 Male, age 72, unknown 39.7
2725 Female, age 75, unknown 39.1
2584 Male, age 75, left hemisphere 37.8
Substantia nigra
nTPM: 31.1
1889 Female, age 72, unknown 35.5
2583 Male, age 75, right hemisphere 33.9
2409 Female, age 72, unknown 32.6
2590 Female, age 75, unknown 32.4
2665 Male, age 74, both hemispheres 32.4
1851 Male, age 51, unknown 31.5
1941 Male, age 53, unknown 30.4
2241 Male, age 72, unknown 28.7
1916 Female, age 42, unknown 27.7
2699 Male, age 18, unknown 25.5
Superior colliculus
nTPM: 37.0
2668 Female, age 75, unknown 58.3
1895 Male, age 76, right hemisphere 40.2
2261 Male, age 18, unknown 37.1
1796 Male, age 53, unknown 36.6
1913 Female, age 42, unknown 34.8
1839 Male, age 51, unknown 34.1
2587 Male, age 74, left hemisphere 34.1
1995 Male, age 72, unknown 33.7
2087 Female, age 72, unknown 32.1
2664 Male, age 75, both hemispheres 29.5
Ventral tegmental area
nTPM: 33.7
2410 Female, age 72, unknown 37.1
2223 Female, age 72, unknown 34.7
1915 Female, age 42, unknown 34.0
1942 Male, age 51, unknown 33.7
2218 Male, age 76, both hemispheres 31.8
2021 Male, age 53, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.0
Samples: 139

Max nTPM: 234.4
Min nTPM: 11.6
Std nTPM: 21.9
Median nTPM: 27.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 234.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 82.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 80.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 71.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 67.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 64.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 62.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 62.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 59.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 58.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 54.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.3
FF:10158-103A5 76 years, female 30.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.6
Pig sample Sample description nTPM
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 43.9
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 43.9
Sample C Male 30.6
Sample D Male 21.7
Periaqueductal gray
nTPM: 27.9
Samples: 3

Max nTPM: 38.5
Min nTPM: 21.0
Sample B Female 38.5
Sample C Male 24.1
Sample D Male 21.0
Substantia nigra
nTPM: 39.7
Samples: 4

Max nTPM: 43.5
Min nTPM: 31.2
Sample A Female 43.5
Sample B Female 42.3
Sample C Male 31.2
Sample D Male 41.6
Superior colliculi
nTPM: 28.2
Samples: 4

Max nTPM: 36.5
Min nTPM: 15.6
Sample A Female 36.5
Sample B Female 15.6
Sample C Male 30.4
Sample D Male 30.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 30.9
Min nTPM: 28.3
Sample A Male 29.3
Sample B Male 28.3
Sample C Female 28.8
Sample D Female 30.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
71836841 Antisense, RP_051017_02_C04, Mouse strain C57BL/6J (56 days, male) 4.8
68196927 Antisense, RP_041116_01_F06, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.