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EXOSC5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.4 nTPM
HPA:18.4 nTPM
GTEx:16.1 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:10.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
2019 Male, age 18, unknown 19.2
2411 Female, age 72, unknown 19.0
1827 Male, age 72, unknown 18.5
1870 Female, age 42, unknown 18.5
2586 Male, age 75, left hemisphere 17.8
2828 Female, age 72, unknown 17.5
1830 Male, age 51, unknown 17.3
1833 Male, age 53, unknown 17.2
2666 Male, age 74, left hemisphere 17.0
2219 Male, age 76, both hemispheres 16.2
Dorsal raphe nucleus
nTPM: 17.5
2750 Male, age 76, both hemispheres 18.5
2298 Female, age 72, unknown 18.1
2047 Male, age 72, unknown 17.8
2016 Female, age 72, unknown 16.9
1828 Male, age 53, unknown 16.2
Inferior colliculus
nTPM: 16.9
2097 Female, age 72, unknown 17.9
1890 Male, age 53, unknown 17.2
1848 Female, age 42, unknown 16.9
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 18.2
2220 Male, age 76, midline 18.2
Pedunculopontine tegmental nucleus
nTPM: 17.0
2334 Male, age 80, both hemispheres 17.9
1921 Female, age 85, both hemispheres 17.6
2338 Male, age 61, both hemispheres 15.3
Periaquaductal grey, anterior
nTPM: 18.4
2502 Female, age 75, unknown 19.7
1795 Male, age 51, unknown 18.2
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 16.1
2464 Female, age 72, unknown 17.2
1840 Male, age 53, unknown 16.3
1831 Male, age 72, unknown 15.6
2850 Male, age 76, both hemispheres 15.2
Periaquaductal grey, lateral
nTPM: 16.9
2272 Male, age 74, both hemispheres 17.7
2053 Male, age 18, unknown 17.4
2140 Male, age 76, both hemispheres 15.5
Pretectal area
nTPM: 18.0
1816 Male, age 51, unknown 19.1
1817 Female, age 42, unknown 19.0
2667 Female, age 75, unknown 18.8
2007 Male, age 72, unknown 18.5
1944 Female, age 72, unknown 18.1
2273 Male, age 74, both hemispheres 18.1
1815 Male, age 53, unknown 17.8
2316 Male, age 76, right hemisphere 17.8
2407 Male, age 75, both hemispheres 17.6
2224 Female, age 72, unknown 16.8
2825 Male, age 18, unknown 16.6
Red nucleus
nTPM: 18.1
2227 Male, age 72, unknown 19.1
1904 Male, age 53, unknown 18.8
2769 Male, age 72, unknown 18.8
2823 Male, age 76, right hemisphere 18.4
2588 Male, age 74, left hemisphere 18.2
1821 Female, age 72, unknown 18.1
1954 Female, age 42, unknown 17.9
2503 Female, age 72, unknown 17.9
2584 Male, age 75, left hemisphere 17.7
2725 Female, age 75, unknown 17.6
2785 Male, age 18, unknown 17.6
1865 Male, age 51, unknown 17.4
Substantia nigra
nTPM: 17.2
1851 Male, age 51, unknown 18.1
1889 Female, age 72, unknown 17.8
1916 Female, age 42, unknown 17.7
2699 Male, age 18, unknown 17.5
1941 Male, age 53, unknown 17.4
2583 Male, age 75, right hemisphere 17.4
2590 Female, age 75, unknown 17.1
2665 Male, age 74, both hemispheres 16.6
2409 Female, age 72, unknown 16.1
2241 Male, age 72, unknown 15.9
Superior colliculus
nTPM: 17.7
1796 Male, age 53, unknown 18.7
2664 Male, age 75, both hemispheres 18.7
2261 Male, age 18, unknown 18.4
1995 Male, age 72, unknown 18.0
2087 Female, age 72, unknown 17.8
2587 Male, age 74, left hemisphere 17.7
1839 Male, age 51, unknown 17.5
1913 Female, age 42, unknown 17.3
1895 Male, age 76, right hemisphere 16.5
2668 Female, age 75, unknown 16.4
Ventral tegmental area
nTPM: 17.7
2410 Female, age 72, unknown 18.7
2218 Male, age 76, both hemispheres 17.8
1915 Female, age 42, unknown 17.5
2223 Female, age 72, unknown 17.5
2021 Male, age 53, unknown 17.4
1942 Male, age 51, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 29.4
Min nTPM: 9.9
Std nTPM: 3.3
Median nTPM: 15.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 29.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 23.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 23.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 22.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 21.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 20.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 20.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Midbrain
nTPM: 10.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 8.0
Sample A Female 15.5
Sample B Female 8.0
Sample C Male 8.1
Sample D Male 8.9
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 8.0
Min nTPM: 6.8
Sample B Female 6.8
Sample C Male 8.0
Sample D Male 7.1
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.5
Sample A Female 11.6
Sample B Female 7.5
Sample C Male 9.5
Sample D Male 8.5
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 13.2
Min nTPM: 9.1
Sample A Female 13.2
Sample B Female 9.1
Sample C Male 11.1
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.1
Sample A Male 12.7
Sample B Male 9.1
Sample C Female 9.3
Sample D Female 12.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.