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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:139.9 nTPM
HPA:139.9 nTPM
GTEx:165.2 nTPM
FANTOM5:97.1 Scaled Tags Per Million
Pig:107.0 nTPM
Mouse:333.8 nTPM
Allen mouse:16.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031531
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 139.9
Sample id Sample description nTPM
Hippocampus
nTPM: 133.0
1855 Male, age 76, left hemisphere 143.1
1898 Male, age 80, left hemisphere 140.7
2621 Female, age 67, right hemisphere 135.6
1911 Female, age 85, right hemisphere 127.8
2148 Female, age 91, left hemisphere 126.1
2529 Female, age 94, left hemisphere 124.5
Dentate gyrus
nTPM: 128.0
2010 Male, age 76, both hemispheres 137.8
1927 Female, age 91, both hemispheres 136.8
2530 Female, age 94, left hemisphere 128.9
2246 Female, age 85, both hemispheres 125.1
2528 Male, age 74, both hemispheres 123.4
2531 Female, age 67, both hemispheres 116.3
Entorhinal gyrus
nTPM: 123.7
1938 Female, age 85, left hemisphere 130.4
2764 Male, age 80, right hemisphere 127.5
1787 Male, age 76, left hemisphere 126.0
2117 Female, age 91, right hemisphere 123.2
2613 Female, age 94, left hemisphere 119.7
2686 Male, age 75, right hemisphere 115.6
Hippocampus, CA1
nTPM: 139.9
2749 Male, age 80, left hemisphere 177.4
1873 Female, age 85, both hemispheres 142.0
2045 Male, age 76, both hemispheres 130.0
2527 Male, age 74, both hemispheres 126.4
2082 Female, age 91, right hemisphere 123.6
Hippocampus, CA2
nTPM: 132.3
1892 Male, age 76, both hemispheres 146.0
1963 Male, age 80, left hemisphere 145.4
2249 Male, age 74, both hemispheres 129.0
1940 Female, age 85, left hemisphere 127.0
2113 Female, age 91, right hemisphere 123.4
2437 Female, age 94, left hemisphere 122.8
Hippocampus, CA3
nTPM: 131.0
2137 Male, age 80, left hemisphere 153.4
1867 Male, age 76, both hemispheres 140.0
2436 Male, age 74, both hemispheres 126.6
1891 Female, age 85, both hemispheres 123.4
2620 Female, age 94, left hemisphere 122.4
2861 Female, age 67, both hemispheres 120.2
Parahippocampal cortex
nTPM: 124.7
2250 Female, age 67, right hemisphere 132.7
1850 Male, age 80, both hemispheres 130.5
2245 Female, age 91, both hemispheres 129.0
2018 Male, age 76, both hemispheres 127.6
1933 Female, age 85, both hemispheres 124.4
1990 Female, age 91, right hemisphere 123.2
2532 Female, age 72, left hemisphere 122.7
2692 Male, age 74, both hemispheres 119.8
2693 Female, age 94, both hemispheres 119.1
2622 Female, age 67, right hemisphere 117.7
Perirhinal gyrus
nTPM: 130.4
1847 Female, age 91, left hemisphere 136.3
1794 Male, age 80, right hemisphere 133.1
1841 Female, age 85, right hemisphere 129.2
2848 Male, age 76, right hemisphere 126.9
2521 Female, age 94, right hemisphere 126.7
Subiculum
nTPM: 125.0
1901 Male, age 80, both hemispheres 133.0
2042 Male, age 76, both hemispheres 125.4
1977 Female, age 85, both hemispheres 125.2
2619 Male, age 74, both hemispheres 123.3
2729 Female, age 91, right hemisphere 122.8
2438 Female, age 94, left hemisphere 120.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 165.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 165.2
Samples: 197

Max nTPM: 310.3
Min nTPM: 92.1
Std nTPM: 44.4
Median nTPM: 153.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 310.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 305.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 301.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 275.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 271.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 269.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 265.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 264.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 262.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 257.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 256.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 97.1
FF:10153-102I9 76 years, female 100.0
FF:10169-103B7 60 years, female 94.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 107.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 107.0
Samples: 4

Max nTPM: 140.3
Min nTPM: 83.9
Sample A Female 140.3
Sample B Female 105.3
Sample C Male 83.9
Sample D Male 98.4
Entorhinal cortex
nTPM: 70.5
Samples: 4

Max nTPM: 82.1
Min nTPM: 61.6
Sample A Female 82.1
Sample B Female 69.8
Sample C Male 68.5
Sample D Male 61.6
Subiculum
nTPM: 81.5
Samples: 4

Max nTPM: 98.0
Min nTPM: 69.5
Sample A Female 98.0
Sample B Female 69.5
Sample C Male 78.1
Sample D Male 80.5
Ventral hippocampus
nTPM: 85.3
Samples: 4

Max nTPM: 98.1
Min nTPM: 59.9
Sample A Female 86.6
Sample B Female 59.9
Sample C Male 96.6
Sample D Male 98.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 333.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 266.7
Samples: 4

Max nTPM: 289.2
Min nTPM: 241.2
Sample A Male 250.0
Sample B Male 241.2
Sample C Female 289.2
Sample D Female 286.3
Hippocampal formation
nTPM: 333.8
Samples: 4

Max nTPM: 368.7
Min nTPM: 314.4
Sample A Male 332.4
Sample B Male 319.7
Sample C Female 368.7
Sample D Female 314.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.0
75080633 Antisense, RP_060412_04_G04, Mouse strain C57BL/6J (56 days, male) 18.3
74357646 Antisense, RP_060119_03_B08, Mouse strain C57BL/6J (56 days, male) 16.1
70919131 Antisense, RP_050712_04_C05, Mouse strain C57BL/6J (56 days, male) 13.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.