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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:26.6 nTPM
HPA:26.6 nTPM
GTEx:32.6 nTPM
FANTOM5:139.7 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:45.4 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013994Antibody HPA013995
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Hippocampus
nTPM: 26.6
2148 Female, age 91, left hemisphere 36.2
1898 Male, age 80, left hemisphere 31.0
2529 Female, age 94, left hemisphere 29.3
1911 Female, age 85, right hemisphere 23.2
1855 Male, age 76, left hemisphere 23.1
2621 Female, age 67, right hemisphere 16.8
Dentate gyrus
nTPM: 22.2
2528 Male, age 74, both hemispheres 34.1
2010 Male, age 76, both hemispheres 21.6
2246 Female, age 85, both hemispheres 21.5
2530 Female, age 94, left hemisphere 21.5
1927 Female, age 91, both hemispheres 18.9
2531 Female, age 67, both hemispheres 15.9
Entorhinal gyrus
nTPM: 16.0
2117 Female, age 91, right hemisphere 30.7
1787 Male, age 76, left hemisphere 17.0
1938 Female, age 85, left hemisphere 15.9
2764 Male, age 80, right hemisphere 14.7
2686 Male, age 75, right hemisphere 11.1
2613 Female, age 94, left hemisphere 6.6
Hippocampus, CA1
nTPM: 19.2
2527 Male, age 74, both hemispheres 28.8
1873 Female, age 85, both hemispheres 24.5
2045 Male, age 76, both hemispheres 16.2
2749 Male, age 80, left hemisphere 14.7
2082 Female, age 91, right hemisphere 12.0
Hippocampus, CA2
nTPM: 18.8
2249 Male, age 74, both hemispheres 29.1
1963 Male, age 80, left hemisphere 19.8
2113 Female, age 91, right hemisphere 18.9
1940 Female, age 85, left hemisphere 17.3
2437 Female, age 94, left hemisphere 17.3
1892 Male, age 76, both hemispheres 10.4
Hippocampus, CA3
nTPM: 17.9
2620 Female, age 94, left hemisphere 26.6
2861 Female, age 67, both hemispheres 23.5
1891 Female, age 85, both hemispheres 18.0
2436 Male, age 74, both hemispheres 14.0
1867 Male, age 76, both hemispheres 13.2
2137 Male, age 80, left hemisphere 12.4
Parahippocampal cortex
nTPM: 15.4
2692 Male, age 74, both hemispheres 19.7
2622 Female, age 67, right hemisphere 18.8
2245 Female, age 91, both hemispheres 18.3
2250 Female, age 67, right hemisphere 18.2
2018 Male, age 76, both hemispheres 17.9
1990 Female, age 91, right hemisphere 16.4
1933 Female, age 85, both hemispheres 15.8
2532 Female, age 72, left hemisphere 11.0
1850 Male, age 80, both hemispheres 10.5
2693 Female, age 94, both hemispheres 7.1
Perirhinal gyrus
nTPM: 13.1
1794 Male, age 80, right hemisphere 16.5
1847 Female, age 91, left hemisphere 14.2
2521 Female, age 94, right hemisphere 14.2
1841 Female, age 85, right hemisphere 11.2
2848 Male, age 76, right hemisphere 9.2
Subiculum
nTPM: 19.7
2729 Female, age 91, right hemisphere 37.0
2619 Male, age 74, both hemispheres 26.0
1977 Female, age 85, both hemispheres 17.1
2042 Male, age 76, both hemispheres 14.5
1901 Male, age 80, both hemispheres 13.6
2438 Female, age 94, left hemisphere 9.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.6
Samples: 197

Max nTPM: 80.4
Min nTPM: 15.4
Std nTPM: 10.3
Median nTPM: 31.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 80.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 77.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 57.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 55.0
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 54.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 54.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 53.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 53.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 52.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 52.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 50.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 139.7
FF:10153-102I9 76 years, female 171.6
FF:10169-103B7 60 years, female 107.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 54.8
Samples: 4

Max nTPM: 57.9
Min nTPM: 49.0
Sample A Female 57.7
Sample B Female 54.7
Sample C Male 57.9
Sample D Male 49.0
Entorhinal cortex
nTPM: 39.3
Samples: 4

Max nTPM: 43.9
Min nTPM: 35.6
Sample A Female 41.3
Sample B Female 43.9
Sample C Male 36.2
Sample D Male 35.6
Subiculum
nTPM: 43.0
Samples: 4

Max nTPM: 49.4
Min nTPM: 39.1
Sample A Female 49.4
Sample B Female 40.0
Sample C Male 43.3
Sample D Male 39.1
Ventral hippocampus
nTPM: 51.9
Samples: 4

Max nTPM: 55.8
Min nTPM: 48.7
Sample A Female 55.8
Sample B Female 48.7
Sample C Male 51.4
Sample D Male 51.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 45.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.7
Samples: 4

Max nTPM: 37.7
Min nTPM: 27.0
Sample A Male 34.3
Sample B Male 27.0
Sample C Female 37.7
Sample D Female 31.8
Hippocampal formation
nTPM: 45.4
Samples: 4

Max nTPM: 52.0
Min nTPM: 40.8
Sample A Male 42.3
Sample B Male 46.5
Sample C Female 52.0
Sample D Female 40.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
72472778 Antisense, RP_051101_02_D10, Mouse strain C57BL/6J (56 days, male) 0.6
69626546 Antisense, RP_050426_04_H01, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.