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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:26.6 nTPM
HPA:26.6 nTPM
GTEx:38.5 nTPM
FANTOM5:158.5 Scaled Tags Per Million
Pig:126.7 nTPM
Mouse:188.4 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040809Antibody HPA075862
Glial cells Not detectedNot detected
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Hippocampus
nTPM: 7.1
2621 Female, age 67, right hemisphere 27.7
2148 Female, age 91, left hemisphere 10.2
1898 Male, age 80, left hemisphere 4.8
1855 Male, age 76, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 18.7
1927 Female, age 91, both hemispheres 50.6
2531 Female, age 67, both hemispheres 36.6
2530 Female, age 94, left hemisphere 15.0
2246 Female, age 85, both hemispheres 10.2
2010 Male, age 76, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 0.4
2613 Female, age 94, left hemisphere 2.6
1787 Male, age 76, left hemisphere 0.0
1938 Female, age 85, left hemisphere 0.0
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
2764 Male, age 80, right hemisphere 0.0
Hippocampus, CA1
nTPM: 19.5
2749 Male, age 80, left hemisphere 57.3
1873 Female, age 85, both hemispheres 23.6
2045 Male, age 76, both hemispheres 15.2
2082 Female, age 91, right hemisphere 1.5
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 6.0
1892 Male, age 76, both hemispheres 23.1
1963 Male, age 80, left hemisphere 13.0
1940 Female, age 85, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 26.6
2620 Female, age 94, left hemisphere 78.5
2137 Male, age 80, left hemisphere 45.6
2861 Female, age 67, both hemispheres 35.6
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 5.4
2245 Female, age 91, both hemispheres 17.2
1850 Male, age 80, both hemispheres 11.7
2693 Female, age 94, both hemispheres 11.2
2622 Female, age 67, right hemisphere 7.6
2532 Female, age 72, left hemisphere 6.9
1933 Female, age 85, both hemispheres 0.0
1990 Female, age 91, right hemisphere 0.0
2018 Male, age 76, both hemispheres 0.0
2250 Female, age 67, right hemisphere 0.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 15.0
1841 Female, age 85, right hemisphere 23.3
1847 Female, age 91, left hemisphere 19.5
1794 Male, age 80, right hemisphere 19.4
2521 Female, age 94, right hemisphere 12.8
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 0.0
1901 Male, age 80, both hemispheres 0.0
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.5
Samples: 197

Max nTPM: 116.8
Min nTPM: 0.8
Std nTPM: 27.0
Median nTPM: 34.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 116.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 110.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 105.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 101.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 99.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 99.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 95.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 94.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 91.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 89.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 86.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 158.5
FF:10169-103B7 60 years, female 208.2
FF:10153-102I9 76 years, female 108.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 126.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 126.7
Samples: 4

Max nTPM: 149.6
Min nTPM: 75.7
Sample A Female 144.2
Sample B Female 137.4
Sample C Male 75.7
Sample D Male 149.6
Entorhinal cortex
nTPM: 104.1
Samples: 4

Max nTPM: 123.7
Min nTPM: 88.3
Sample A Female 123.7
Sample B Female 108.2
Sample C Male 88.3
Sample D Male 96.0
Subiculum
nTPM: 65.6
Samples: 4

Max nTPM: 88.7
Min nTPM: 55.4
Sample A Female 88.7
Sample B Female 55.4
Sample C Male 59.9
Sample D Male 58.4
Ventral hippocampus
nTPM: 90.0
Samples: 4

Max nTPM: 125.3
Min nTPM: 66.4
Sample A Female 92.7
Sample B Female 66.4
Sample C Male 75.4
Sample D Male 125.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 188.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 115.9
Samples: 4

Max nTPM: 124.3
Min nTPM: 107.2
Sample A Male 124.3
Sample B Male 115.6
Sample C Female 116.5
Sample D Female 107.2
Hippocampal formation
nTPM: 188.4
Samples: 4

Max nTPM: 233.5
Min nTPM: 147.6
Sample A Male 147.6
Sample B Male 218.0
Sample C Female 233.5
Sample D Female 154.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
71280790 Antisense, RP_050818_01_F02, Mouse strain C57BL/6J (56 days, male) 8.2
100145385 Antisense, RP_110519_02_F02, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.