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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.2 nTPM
HPA:102.2 nTPM
GTEx:89.3 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:124.8 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.3
2019 Male, age 18, unknown 98.5
1833 Male, age 53, unknown 95.2
2666 Male, age 74, left hemisphere 89.3
1870 Female, age 42, unknown 89.0
1830 Male, age 51, unknown 88.4
2219 Male, age 76, both hemispheres 86.4
2828 Female, age 72, unknown 84.7
2411 Female, age 72, unknown 82.0
1827 Male, age 72, unknown 81.5
2586 Male, age 75, left hemisphere 68.2
Dorsal raphe nucleus
nTPM: 83.5
2750 Male, age 76, both hemispheres 89.1
2016 Female, age 72, unknown 84.2
2298 Female, age 72, unknown 83.5
1828 Male, age 53, unknown 83.1
2047 Male, age 72, unknown 77.6
Inferior colliculus
nTPM: 86.1
2097 Female, age 72, unknown 92.8
1848 Female, age 42, unknown 86.1
1890 Male, age 53, unknown 85.8
2849 Male, age 72, unknown 79.8
Median raphe nucleus
nTPM: 80.9
2220 Male, age 76, midline 80.9
Pedunculopontine tegmental nucleus
nTPM: 90.8
2338 Male, age 61, both hemispheres 94.9
2334 Male, age 80, both hemispheres 91.7
1921 Female, age 85, both hemispheres 85.8
Periaquaductal grey, anterior
nTPM: 84.6
2502 Female, age 75, unknown 97.3
1947 Male, age 18, unknown 81.4
1795 Male, age 51, unknown 75.1
Periaquaductal grey, dorsal
nTPM: 79.6
2464 Female, age 72, unknown 86.5
1831 Male, age 72, unknown 80.9
2850 Male, age 76, both hemispheres 76.8
1840 Male, age 53, unknown 74.1
Periaquaductal grey, lateral
nTPM: 80.0
2272 Male, age 74, both hemispheres 84.1
2053 Male, age 18, unknown 81.3
2140 Male, age 76, both hemispheres 74.7
Pretectal area
nTPM: 85.7
1817 Female, age 42, unknown 96.2
2007 Male, age 72, unknown 92.9
1815 Male, age 53, unknown 90.5
1944 Female, age 72, unknown 89.7
1816 Male, age 51, unknown 87.2
2667 Female, age 75, unknown 87.0
2316 Male, age 76, right hemisphere 85.0
2273 Male, age 74, both hemispheres 82.0
2224 Female, age 72, unknown 81.7
2825 Male, age 18, unknown 77.7
2407 Male, age 75, both hemispheres 72.6
Red nucleus
nTPM: 102.2
1954 Female, age 42, unknown 127.3
1904 Male, age 53, unknown 122.7
1821 Female, age 72, unknown 117.8
2823 Male, age 76, right hemisphere 116.9
2503 Female, age 72, unknown 108.9
1865 Male, age 51, unknown 106.1
2227 Male, age 72, unknown 97.9
2785 Male, age 18, unknown 97.8
2769 Male, age 72, unknown 96.8
2725 Female, age 75, unknown 80.3
2588 Male, age 74, left hemisphere 79.2
2584 Male, age 75, left hemisphere 74.9
Substantia nigra
nTPM: 84.1
2665 Male, age 74, both hemispheres 102.6
1889 Female, age 72, unknown 89.5
2241 Male, age 72, unknown 88.5
1851 Male, age 51, unknown 82.7
2409 Female, age 72, unknown 82.3
2590 Female, age 75, unknown 81.9
1941 Male, age 53, unknown 80.3
1916 Female, age 42, unknown 79.9
2699 Male, age 18, unknown 78.5
2583 Male, age 75, right hemisphere 74.9
Superior colliculus
nTPM: 85.0
1895 Male, age 76, right hemisphere 97.1
1913 Female, age 42, unknown 91.2
2087 Female, age 72, unknown 91.0
2587 Male, age 74, left hemisphere 85.8
2668 Female, age 75, unknown 85.0
1995 Male, age 72, unknown 84.8
2261 Male, age 18, unknown 84.7
1839 Male, age 51, unknown 83.6
1796 Male, age 53, unknown 76.9
2664 Male, age 75, both hemispheres 69.5
Ventral tegmental area
nTPM: 81.7
2410 Female, age 72, unknown 86.4
2223 Female, age 72, unknown 84.3
2218 Male, age 76, both hemispheres 81.6
1942 Male, age 51, unknown 80.8
1915 Female, age 42, unknown 80.5
2021 Male, age 53, unknown 76.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.3
Samples: 139

Max nTPM: 281.7
Min nTPM: 18.5
Std nTPM: 45.7
Median nTPM: 75.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 281.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 241.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 215.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 196.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 196.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 193.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 178.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 172.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 170.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 169.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 165.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.4
FF:10158-103A5 76 years, female 57.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.8
Pig sample Sample description nTPM
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 23.5
Min nTPM: 18.5
Sample A Female 21.8
Sample B Female 23.5
Sample C Male 18.5
Sample D Male 18.5
Periaqueductal gray
nTPM: 20.5
Samples: 3

Max nTPM: 20.8
Min nTPM: 20.2
Sample B Female 20.8
Sample C Male 20.2
Sample D Male 20.5
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 31.8
Min nTPM: 21.3
Sample A Female 31.8
Sample B Female 24.2
Sample C Male 22.0
Sample D Male 21.3
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 30.4
Min nTPM: 15.9
Sample A Female 25.8
Sample B Female 15.9
Sample C Male 24.3
Sample D Male 30.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 124.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.8
Samples: 4

Max nTPM: 132.4
Min nTPM: 119.4
Sample A Male 132.4
Sample B Male 126.8
Sample C Female 119.4
Sample D Female 120.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
74881146 Antisense, RP_060220_01_A04, Mouse strain C57BL/6J (56 days, male) 2.8
69549248 Antisense, RP_050125_01_C03, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.