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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:34.0 nTPM
HPA:34.0 nTPM
GTEx:23.5 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:12.1 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036089Antibody HPA036090Antibody CAB018774
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Hippocampus
nTPM: 30.7
2529 Female, age 94, left hemisphere 38.1
1855 Male, age 76, left hemisphere 35.9
1911 Female, age 85, right hemisphere 30.2
2148 Female, age 91, left hemisphere 28.3
1898 Male, age 80, left hemisphere 27.1
2621 Female, age 67, right hemisphere 24.7
Dentate gyrus
nTPM: 34.0
2530 Female, age 94, left hemisphere 56.6
2010 Male, age 76, both hemispheres 44.3
2528 Male, age 74, both hemispheres 34.7
2246 Female, age 85, both hemispheres 29.0
2531 Female, age 67, both hemispheres 26.1
1927 Female, age 91, both hemispheres 13.5
Entorhinal gyrus
nTPM: 22.6
2686 Male, age 75, right hemisphere 31.8
2117 Female, age 91, right hemisphere 24.9
1787 Male, age 76, left hemisphere 24.6
2764 Male, age 80, right hemisphere 23.2
2613 Female, age 94, left hemisphere 16.6
1938 Female, age 85, left hemisphere 14.3
Hippocampus, CA1
nTPM: 28.0
2527 Male, age 74, both hemispheres 36.1
2045 Male, age 76, both hemispheres 34.0
2082 Female, age 91, right hemisphere 26.4
1873 Female, age 85, both hemispheres 25.5
2749 Male, age 80, left hemisphere 17.8
Hippocampus, CA2
nTPM: 27.1
1963 Male, age 80, left hemisphere 33.7
2437 Female, age 94, left hemisphere 33.2
2249 Male, age 74, both hemispheres 32.4
2113 Female, age 91, right hemisphere 25.3
1940 Female, age 85, left hemisphere 24.6
1892 Male, age 76, both hemispheres 13.2
Hippocampus, CA3
nTPM: 26.1
2861 Female, age 67, both hemispheres 35.0
1891 Female, age 85, both hemispheres 29.0
2436 Male, age 74, both hemispheres 28.9
2137 Male, age 80, left hemisphere 24.2
2620 Female, age 94, left hemisphere 22.1
1867 Male, age 76, both hemispheres 17.3
Parahippocampal cortex
nTPM: 20.5
2018 Male, age 76, both hemispheres 46.4
2692 Male, age 74, both hemispheres 34.2
2622 Female, age 67, right hemisphere 25.7
2532 Female, age 72, left hemisphere 19.9
2245 Female, age 91, both hemispheres 18.4
1850 Male, age 80, both hemispheres 15.4
1990 Female, age 91, right hemisphere 14.8
2250 Female, age 67, right hemisphere 10.5
1933 Female, age 85, both hemispheres 10.3
2693 Female, age 94, both hemispheres 9.6
Perirhinal gyrus
nTPM: 10.3
2848 Male, age 76, right hemisphere 14.0
1794 Male, age 80, right hemisphere 12.2
2521 Female, age 94, right hemisphere 10.1
1841 Female, age 85, right hemisphere 7.6
1847 Female, age 91, left hemisphere 7.5
Subiculum
nTPM: 32.5
2042 Male, age 76, both hemispheres 51.1
2619 Male, age 74, both hemispheres 35.5
1901 Male, age 80, both hemispheres 31.8
2729 Female, age 91, right hemisphere 27.8
2438 Female, age 94, left hemisphere 27.5
1977 Female, age 85, both hemispheres 21.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.5
Samples: 197

Max nTPM: 50.1
Min nTPM: 4.5
Std nTPM: 8.7
Median nTPM: 22.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 50.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 48.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 47.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 44.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 43.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 42.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 42.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 42.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 41.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 41.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 40.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.3
FF:10153-102I9 76 years, female 62.0
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 18.8
Samples: 4

Max nTPM: 24.4
Min nTPM: 11.8
Sample A Female 21.8
Sample B Female 17.3
Sample C Male 24.4
Sample D Male 11.8
Entorhinal cortex
nTPM: 18.5
Samples: 4

Max nTPM: 24.6
Min nTPM: 12.6
Sample A Female 24.6
Sample B Female 18.1
Sample C Male 18.6
Sample D Male 12.6
Subiculum
nTPM: 19.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 13.7
Sample A Female 17.7
Sample B Female 13.7
Sample C Male 21.8
Sample D Male 24.1
Ventral hippocampus
nTPM: 22.4
Samples: 4

Max nTPM: 34.8
Min nTPM: 15.3
Sample A Female 20.2
Sample B Female 15.3
Sample C Male 34.8
Sample D Male 19.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.1
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.8
Sample A Male 14.9
Sample B Male 11.2
Sample C Female 10.8
Sample D Female 11.5
Hippocampal formation
nTPM: 9.5
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.6
Sample A Male 9.0
Sample B Male 9.4
Sample C Female 8.6
Sample D Female 10.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
71023014 Antisense, RP_050719_02_B05, Mouse strain C57BL/6J (56 days, male) 0.5
73512354 Antisense, RP_050719_02_B05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.