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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:43.8 nTPM
HPA:43.8 nTPM
GTEx:32.1 nTPM
FANTOM5:123.9 Scaled Tags Per Million
Pig:26.6 nTPM
Mouse:112.0 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006923Antibody HPA048368Antibody CAB022545
Glial cells Not detectedNot detectedMedium
Neuronal cells MediumNot detectedMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.8
Sample id Sample description nTPM
Hippocampus
nTPM: 41.0
1898 Male, age 80, left hemisphere 46.1
1911 Female, age 85, right hemisphere 42.7
2621 Female, age 67, right hemisphere 40.2
2529 Female, age 94, left hemisphere 39.9
2148 Female, age 91, left hemisphere 38.7
1855 Male, age 76, left hemisphere 38.2
Dentate gyrus
nTPM: 39.9
2010 Male, age 76, both hemispheres 47.6
1927 Female, age 91, both hemispheres 42.1
2528 Male, age 74, both hemispheres 41.2
2530 Female, age 94, left hemisphere 37.7
2246 Female, age 85, both hemispheres 36.1
2531 Female, age 67, both hemispheres 34.4
Entorhinal gyrus
nTPM: 39.4
1938 Female, age 85, left hemisphere 42.6
2117 Female, age 91, right hemisphere 40.9
2764 Male, age 80, right hemisphere 39.0
1787 Male, age 76, left hemisphere 38.7
2686 Male, age 75, right hemisphere 37.6
2613 Female, age 94, left hemisphere 37.4
Hippocampus, CA1
nTPM: 43.8
2749 Male, age 80, left hemisphere 49.3
1873 Female, age 85, both hemispheres 46.7
2045 Male, age 76, both hemispheres 44.2
2527 Male, age 74, both hemispheres 41.1
2082 Female, age 91, right hemisphere 37.9
Hippocampus, CA2
nTPM: 41.4
1892 Male, age 76, both hemispheres 45.9
2249 Male, age 74, both hemispheres 43.3
1963 Male, age 80, left hemisphere 43.2
2437 Female, age 94, left hemisphere 39.6
1940 Female, age 85, left hemisphere 38.4
2113 Female, age 91, right hemisphere 38.0
Hippocampus, CA3
nTPM: 39.9
2436 Male, age 74, both hemispheres 42.7
1867 Male, age 76, both hemispheres 42.3
2137 Male, age 80, left hemisphere 42.3
1891 Female, age 85, both hemispheres 41.5
2620 Female, age 94, left hemisphere 35.8
2861 Female, age 67, both hemispheres 34.5
Parahippocampal cortex
nTPM: 40.1
1850 Male, age 80, both hemispheres 45.1
1933 Female, age 85, both hemispheres 44.5
1990 Female, age 91, right hemisphere 41.8
2018 Male, age 76, both hemispheres 41.8
2692 Male, age 74, both hemispheres 39.2
2250 Female, age 67, right hemisphere 38.7
2532 Female, age 72, left hemisphere 38.1
2245 Female, age 91, both hemispheres 37.7
2693 Female, age 94, both hemispheres 37.6
2622 Female, age 67, right hemisphere 36.8
Perirhinal gyrus
nTPM: 42.4
1847 Female, age 91, left hemisphere 47.7
1841 Female, age 85, right hemisphere 42.8
1794 Male, age 80, right hemisphere 42.4
2848 Male, age 76, right hemisphere 40.1
2521 Female, age 94, right hemisphere 39.0
Subiculum
nTPM: 40.3
2042 Male, age 76, both hemispheres 43.3
1901 Male, age 80, both hemispheres 41.8
1977 Female, age 85, both hemispheres 40.9
2729 Female, age 91, right hemisphere 39.9
2619 Male, age 74, both hemispheres 39.8
2438 Female, age 94, left hemisphere 36.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.1
Samples: 197

Max nTPM: 51.7
Min nTPM: 21.9
Std nTPM: 4.2
Median nTPM: 31.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 51.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 45.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 43.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 41.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 41.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 41.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 41.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 40.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 39.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 39.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 38.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 123.9
FF:10169-103B7 60 years, female 150.6
FF:10153-102I9 76 years, female 97.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.1
Samples: 4

Max nTPM: 33.0
Min nTPM: 19.3
Sample A Female 33.0
Sample B Female 27.4
Sample C Male 24.6
Sample D Male 19.3
Entorhinal cortex
nTPM: 24.1
Samples: 4

Max nTPM: 28.3
Min nTPM: 19.4
Sample A Female 24.5
Sample B Female 28.3
Sample C Male 24.3
Sample D Male 19.4
Subiculum
nTPM: 26.6
Samples: 4

Max nTPM: 35.4
Min nTPM: 21.5
Sample A Female 35.4
Sample B Female 25.6
Sample C Male 21.5
Sample D Male 23.9
Ventral hippocampus
nTPM: 23.1
Samples: 4

Max nTPM: 26.4
Min nTPM: 21.1
Sample A Female 26.4
Sample B Female 21.1
Sample C Male 23.4
Sample D Male 21.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 112.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 112.0
Samples: 4

Max nTPM: 117.1
Min nTPM: 107.1
Sample A Male 107.1
Sample B Male 111.0
Sample C Female 112.8
Sample D Female 117.1
Hippocampal formation
nTPM: 111.3
Samples: 4

Max nTPM: 120.7
Min nTPM: 100.4
Sample A Male 120.7
Sample B Male 110.8
Sample C Female 113.4
Sample D Female 100.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
275695 Antisense, RP_040617_01_C07, Mouse strain C57BL/6J (56 days, male) 10.7
321204 Antisense, RP_040617_01_C07, Mouse strain C57BL/6J (56 days, male) 9.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.