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SAR1A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.9 nTPM
HPA:44.9 nTPM
GTEx:34.3 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:110.2 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.0
1827 Male, age 72, unknown 45.9
1870 Female, age 42, unknown 45.8
2586 Male, age 75, left hemisphere 45.1
2411 Female, age 72, unknown 44.8
2019 Male, age 18, unknown 41.1
1833 Male, age 53, unknown 40.1
2828 Female, age 72, unknown 40.1
1830 Male, age 51, unknown 39.7
2666 Male, age 74, left hemisphere 39.5
2219 Male, age 76, both hemispheres 38.0
Dorsal raphe nucleus
nTPM: 42.5
2047 Male, age 72, unknown 44.3
2298 Female, age 72, unknown 43.0
2016 Female, age 72, unknown 42.8
1828 Male, age 53, unknown 42.3
2750 Male, age 76, both hemispheres 40.1
Inferior colliculus
nTPM: 41.1
2097 Female, age 72, unknown 42.7
1890 Male, age 53, unknown 42.1
1848 Female, age 42, unknown 41.6
2849 Male, age 72, unknown 38.1
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Pedunculopontine tegmental nucleus
nTPM: 41.7
1921 Female, age 85, both hemispheres 44.1
2334 Male, age 80, both hemispheres 42.1
2338 Male, age 61, both hemispheres 38.8
Periaquaductal grey, anterior
nTPM: 44.9
1947 Male, age 18, unknown 48.5
2502 Female, age 75, unknown 44.7
1795 Male, age 51, unknown 41.4
Periaquaductal grey, dorsal
nTPM: 42.6
1840 Male, age 53, unknown 47.3
2464 Female, age 72, unknown 43.0
1831 Male, age 72, unknown 41.3
2850 Male, age 76, both hemispheres 38.7
Periaquaductal grey, lateral
nTPM: 39.6
2053 Male, age 18, unknown 44.1
2140 Male, age 76, both hemispheres 38.7
2272 Male, age 74, both hemispheres 36.0
Pretectal area
nTPM: 42.2
1944 Female, age 72, unknown 44.7
1816 Male, age 51, unknown 43.9
2224 Female, age 72, unknown 43.6
2316 Male, age 76, right hemisphere 43.3
2407 Male, age 75, both hemispheres 42.6
2825 Male, age 18, unknown 42.3
1815 Male, age 53, unknown 42.2
2007 Male, age 72, unknown 42.0
1817 Female, age 42, unknown 41.8
2667 Female, age 75, unknown 40.1
2273 Male, age 74, both hemispheres 37.9
Red nucleus
nTPM: 40.0
1821 Female, age 72, unknown 44.8
1954 Female, age 42, unknown 41.4
2725 Female, age 75, unknown 41.3
1904 Male, age 53, unknown 40.9
2584 Male, age 75, left hemisphere 40.7
2503 Female, age 72, unknown 40.4
2588 Male, age 74, left hemisphere 39.8
2769 Male, age 72, unknown 39.5
1865 Male, age 51, unknown 38.8
2823 Male, age 76, right hemisphere 38.1
2227 Male, age 72, unknown 37.4
2785 Male, age 18, unknown 37.2
Substantia nigra
nTPM: 43.9
1916 Female, age 42, unknown 48.3
2241 Male, age 72, unknown 47.5
1851 Male, age 51, unknown 47.1
1889 Female, age 72, unknown 45.5
2590 Female, age 75, unknown 43.3
2665 Male, age 74, both hemispheres 42.7
2583 Male, age 75, right hemisphere 41.9
1941 Male, age 53, unknown 41.6
2699 Male, age 18, unknown 41.1
2409 Female, age 72, unknown 39.6
Superior colliculus
nTPM: 42.5
2664 Male, age 75, both hemispheres 46.3
2668 Female, age 75, unknown 43.7
2587 Male, age 74, left hemisphere 43.4
1839 Male, age 51, unknown 42.5
2087 Female, age 72, unknown 42.4
1895 Male, age 76, right hemisphere 41.9
1913 Female, age 42, unknown 41.9
1995 Male, age 72, unknown 41.2
2261 Male, age 18, unknown 40.9
1796 Male, age 53, unknown 40.6
Ventral tegmental area
nTPM: 42.7
2410 Female, age 72, unknown 46.5
1915 Female, age 42, unknown 45.8
1942 Male, age 51, unknown 44.7
2021 Male, age 53, unknown 41.9
2223 Female, age 72, unknown 39.0
2218 Male, age 76, both hemispheres 38.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.3
Samples: 139

Max nTPM: 57.2
Min nTPM: 23.5
Std nTPM: 5.3
Median nTPM: 33.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 47.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 47.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 46.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 45.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 44.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 44.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 44.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 43.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 43.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.3
FF:10158-103A5 76 years, female 98.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 37.6
Min nTPM: 27.6
Sample A Female 37.6
Sample B Female 28.0
Sample C Male 28.6
Sample D Male 27.6
Periaqueductal gray
nTPM: 25.8
Samples: 3

Max nTPM: 28.3
Min nTPM: 23.9
Sample B Female 25.2
Sample C Male 28.3
Sample D Male 23.9
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 40.5
Min nTPM: 23.2
Sample A Female 40.5
Sample B Female 31.1
Sample C Male 28.5
Sample D Male 23.2
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 34.7
Min nTPM: 25.8
Sample A Female 34.7
Sample B Female 31.5
Sample C Male 29.1
Sample D Male 25.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 110.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 110.2
Samples: 4

Max nTPM: 112.5
Min nTPM: 108.2
Sample A Male 108.2
Sample B Male 109.8
Sample C Female 112.5
Sample D Female 110.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
321204 Antisense, RP_040617_01_C07, Mouse strain C57BL/6J (56 days, male) 4.1
275695 Antisense, RP_040617_01_C07, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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