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PAFAH1B3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:35.4 nTPM
HPA:35.4 nTPM
GTEx:42.7 nTPM
FANTOM5:26.6 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:33.6 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA035639
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.8
1857 Female, age 85, left hemisphere 35.4
2846 Female, age 79, unknown 33.9
2290 Female, age 72, unknown 33.5
1854 Male, age 80, left hemisphere 33.2
1781 Male, age 74, unknown 32.9
2289 Male, age 61, right hemisphere 31.9
2481 Female, age 94, left hemisphere 31.4
2288 Male, age 75, left hemisphere 30.5
Claustrum
nTPM: 32.9
2198 Male, age 80, both hemispheres 37.0
2284 Female, age 91, both hemispheres 34.1
2568 Male, age 61, both hemispheres 33.4
2491 Male, age 75, both hemispheres 33.3
2392 Female, age 94, both hemispheres 33.2
2196 Female, age 79, unknown 32.2
2645 Female, age 72, unknown 31.4
1956 Male, age 74, unknown 31.2
2292 Female, age 85, both hemispheres 30.7
Globus pallidus, externus
nTPM: 29.0
2395 Male, age 75, both hemispheres 30.3
1996 Male, age 80, right hemisphere 30.1
2772 Female, age 79, unknown 29.6
2646 Male, age 61, right hemisphere 28.1
2567 Female, age 72, unknown 26.9
Globus pallidus, internus
nTPM: 28.8
2287 Male, age 75, right hemisphere 31.0
2483 Female, age 94, right hemisphere 30.6
1818 Male, age 74, unknown 28.7
2037 Male, age 80, right hemisphere 28.4
2778 Female, age 91, both hemispheres 28.2
2566 Female, age 72, unknown 27.8
2111 Female, age 85, right hemisphere 26.8
Nucleus accumbens
nTPM: 32.9
1856 Female, age 91, right hemisphere 36.9
1806 Female, age 85, left hemisphere 35.2
1783 Male, age 74, unknown 34.2
2698 Female, age 72, unknown 32.9
2732 Male, age 80, right hemisphere 32.1
2824 Male, age 61, right hemisphere 32.0
2286 Male, age 75, left hemisphere 31.5
2391 Female, age 94, left hemisphere 28.7
Nucleus basalis of Meynert
nTPM: 30.4
2484 Female, age 94, left hemisphere 31.8
2393 Male, age 80, right hemisphere 31.6
2569 Male, age 61, both hemispheres 29.4
2821 Male, age 75, both hemispheres 28.9
Nucleus of the diagonal band
nTPM: 35.4
2775 Male, age 80, right hemisphere 37.8
1812 Female, age 91, both hemispheres 36.4
2195 Female, age 85, both hemispheres 35.6
2029 Male, age 61, right hemisphere 34.2
1979 Male, age 74, unknown 32.9
Olfactory tubercle
nTPM: 33.8
1998 Female, age 91, both hemispheres 35.9
1846 Male, age 80, right hemisphere 34.7
2487 Female, age 94, left hemisphere 33.6
2856 Male, age 75, right hemisphere 31.1
Putamen
nTPM: 32.0
2466 Female, age 79, unknown 35.6
1838 Male, age 80, right hemisphere 33.9
1829 Male, age 74, unknown 31.7
1937 Female, age 91, right hemisphere 31.6
2482 Female, age 94, left hemisphere 30.8
2489 Female, age 72, unknown 30.7
2647 Male, age 75, left hemisphere 29.4
Septal nuclei
nTPM: 33.5
1960 Male, age 74, unknown 36.6
2031 Female, age 72, unknown 36.0
2009 Female, age 91, both hemispheres 34.5
2059 Female, age 85, both hemispheres 34.0
2629 Female, age 94, right hemisphere 32.6
2394 Male, age 61, left hemisphere 30.6
2199 Male, age 80, right hemisphere 30.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.0
Samples: 246

Max nTPM: 78.5
Min nTPM: 8.1
Std nTPM: 10.8
Median nTPM: 35.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 78.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 71.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 64.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 64.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 60.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 59.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 59.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 57.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 57.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 56.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.7
Samples: 246

Max nTPM: 74.1
Min nTPM: 11.4
Std nTPM: 12.1
Median nTPM: 41.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 74.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 72.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 71.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 70.2
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 70.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 69.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 68.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 68.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 66.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 66.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 65.9
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Brain - Putamen (basal ganglia)
Average nTPM: 35.2
Samples: 205

Max nTPM: 68.7
Min nTPM: 11.7
Std nTPM: 11.3
Median nTPM: 34.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 68.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 63.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 62.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 61.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 61.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 60.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 59.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 59.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 59.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 59.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 58.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 26.6
FF:10164-103B2 76 years, female 26.6
Globus pallidus
Scaled Tags Per Million: 14.0
FF:10175-103C4 60 years, female 15.7
FF:10161-103A8 76 years, female 12.2
Nucleus accumbens
Scaled Tags Per Million: 19.7
FF:10037-101F1 23-56 years, mixed 19.7
Putamen
Scaled Tags Per Million: 23.6
FF:10176-103C5 60 years, female 23.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Caudate
nTPM: 15.5
Samples: 4

Max nTPM: 17.9
Min nTPM: 13.1
Sample A Female 17.9
Sample B Female 15.1
Sample C Male 15.7
Sample D Male 13.1
Putamen
nTPM: 30.1
Samples: 4

Max nTPM: 56.2
Min nTPM: 14.6
Sample A Female 56.2
Sample B Female 14.6
Sample C Male 19.6
Sample D Male 29.8
Septum
nTPM: 28.2
Samples: 4

Max nTPM: 33.8
Min nTPM: 20.0
Sample A Female 32.3
Sample B Female 20.0
Sample C Male 33.8
Sample D Male 26.8
Ventral pallidum
nTPM: 30.7
Samples: 4

Max nTPM: 39.6
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 27.5
Sample C Male 39.3
Sample D Male 39.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.5
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.6
Sample A Male 9.7
Sample B Male 11.3
Sample C Female 9.6
Sample D Female 11.5
Septum
nTPM: 33.6
Samples: 4

Max nTPM: 39.6
Min nTPM: 30.1
Sample A Male 39.6
Sample B Male 33.7
Sample C Female 30.1
Sample D Female 31.1
Ventral forebrain
nTPM: 20.6
Samples: 4

Max nTPM: 27.8
Min nTPM: 15.8
Sample A Male 17.1
Sample B Male 27.8
Sample C Female 21.8
Sample D Female 15.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69782676 Antisense, RP_050505_03_E05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69782676 Antisense, RP_050505_03_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.