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COL5A3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:10.7 nTPM
FANTOM5:6.6 Scaled Tags Per Million
Pig:6.9 nTPM
Mouse:0.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
2828 Female, age 72, unknown 29.0
2019 Male, age 18, unknown 27.9
2586 Male, age 75, left hemisphere 27.3
1833 Male, age 53, unknown 26.6
1830 Male, age 51, unknown 25.9
2666 Male, age 74, left hemisphere 25.9
2219 Male, age 76, both hemispheres 25.4
1827 Male, age 72, unknown 25.3
1870 Female, age 42, unknown 25.3
2411 Female, age 72, unknown 25.0
Dorsal raphe nucleus
nTPM: 28.6
1828 Male, age 53, unknown 30.0
2047 Male, age 72, unknown 29.5
2016 Female, age 72, unknown 28.8
2298 Female, age 72, unknown 28.3
2750 Male, age 76, both hemispheres 26.3
Inferior colliculus
nTPM: 27.4
1890 Male, age 53, unknown 29.1
2849 Male, age 72, unknown 27.9
1848 Female, age 42, unknown 27.0
2097 Female, age 72, unknown 25.7
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Pedunculopontine tegmental nucleus
nTPM: 26.2
1921 Female, age 85, both hemispheres 26.7
2334 Male, age 80, both hemispheres 26.1
2338 Male, age 61, both hemispheres 25.8
Periaquaductal grey, anterior
nTPM: 27.6
1795 Male, age 51, unknown 29.1
1947 Male, age 18, unknown 27.2
2502 Female, age 75, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 28.2
2850 Male, age 76, both hemispheres 29.4
1831 Male, age 72, unknown 28.6
2464 Female, age 72, unknown 28.1
1840 Male, age 53, unknown 26.7
Periaquaductal grey, lateral
nTPM: 30.2
2272 Male, age 74, both hemispheres 32.3
2140 Male, age 76, both hemispheres 30.3
2053 Male, age 18, unknown 28.0
Pretectal area
nTPM: 27.9
2273 Male, age 74, both hemispheres 34.0
2667 Female, age 75, unknown 32.4
2316 Male, age 76, right hemisphere 29.3
2007 Male, age 72, unknown 26.9
1817 Female, age 42, unknown 26.8
2407 Male, age 75, both hemispheres 26.8
2825 Male, age 18, unknown 26.8
1944 Female, age 72, unknown 26.6
1815 Male, age 53, unknown 26.2
1816 Male, age 51, unknown 26.0
2224 Female, age 72, unknown 25.6
Red nucleus
nTPM: 28.3
2588 Male, age 74, left hemisphere 30.6
2725 Female, age 75, unknown 30.6
2823 Male, age 76, right hemisphere 30.3
2227 Male, age 72, unknown 28.8
1865 Male, age 51, unknown 28.6
1954 Female, age 42, unknown 28.3
2769 Male, age 72, unknown 28.3
2785 Male, age 18, unknown 27.7
2584 Male, age 75, left hemisphere 27.3
1904 Male, age 53, unknown 26.9
1821 Female, age 72, unknown 26.6
2503 Female, age 72, unknown 25.3
Substantia nigra
nTPM: 26.1
2583 Male, age 75, right hemisphere 28.0
1941 Male, age 53, unknown 27.8
2699 Male, age 18, unknown 27.3
2665 Male, age 74, both hemispheres 26.9
2409 Female, age 72, unknown 26.2
1851 Male, age 51, unknown 25.6
1889 Female, age 72, unknown 25.3
1916 Female, age 42, unknown 25.0
2241 Male, age 72, unknown 25.0
2590 Female, age 75, unknown 24.1
Superior colliculus
nTPM: 26.8
1895 Male, age 76, right hemisphere 28.5
2087 Female, age 72, unknown 28.2
1913 Female, age 42, unknown 27.6
1995 Male, age 72, unknown 27.4
2261 Male, age 18, unknown 27.1
2664 Male, age 75, both hemispheres 26.6
1839 Male, age 51, unknown 26.3
2587 Male, age 74, left hemisphere 25.9
1796 Male, age 53, unknown 25.6
2668 Female, age 75, unknown 25.0
Ventral tegmental area
nTPM: 25.6
2223 Female, age 72, unknown 27.3
1942 Male, age 51, unknown 26.7
2021 Male, age 53, unknown 25.9
1915 Female, age 42, unknown 25.1
2218 Male, age 76, both hemispheres 25.1
2410 Female, age 72, unknown 23.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 139

Max nTPM: 27.9
Min nTPM: 2.3
Std nTPM: 4.7
Median nTPM: 9.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 27.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 24.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 24.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 23.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 21.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 21.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 19.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 18.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 18.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 17.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.6
FF:10158-103A5 76 years, female 6.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.9
Pig sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 12.9
Min nTPM: 2.7
Sample A Female 12.9
Sample B Female 6.9
Sample C Male 2.7
Sample D Male 3.5
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 5.7
Min nTPM: 2.6
Sample B Female 5.7
Sample C Male 2.6
Sample D Male 3.5
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 9.0
Min nTPM: 4.6
Sample A Female 6.1
Sample B Female 7.9
Sample C Male 4.6
Sample D Male 9.0
Superior colliculi
nTPM: 4.5
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.4
Sample A Female 5.3
Sample B Female 4.2
Sample C Male 3.4
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74272917 Antisense, RP_050915_04_C07, Mouse strain C57BL/6J (56 days, male) 0.5
71579942 Antisense, RP_050915_04_C07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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