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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA008779
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Low
Inner plexiform layer
Not detected
Ganglion cells
Medium
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA015907
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 679.3
Min nTPM: 119.3
Std nTPM: 94.5
Median nTPM:
490_1
67 years, female
679.3
117_1
61 years, male
514.6
491_1
89 years, female
492.7
89_1
63 years, male
489.4
217_1
76 years, male
472.0
526_1
61 years, male
459.5
32_1
67 years, male
453.0
415_1
77 years, female
443.7
311_1
78 years, male
441.8
495_1
57 years, female
424.6
139_1
64 years, female
421.5
149_1
88 years, male
416.7
119_1
70 years, female
416.1
162_1
79 years, female
415.2
6_1
73 years, female
413.6
499_1
55 years, female
400.7
447_1
81 years, male
399.4
347_1
72 years, male
397.9
324_1
76 years, male
391.3
81_1
67 years, male
389.0
414_1
84 years, female
380.1
466_1
57 years, female
379.9
307_1
66 years, female
374.1
321_1
62 years, female
374.1
313_1
79 years, female
374.0
142_1
61 years, female
370.3
251_1
78 years, male
365.3
126_1
63 years, male
364.8
43_1
64 years, female
361.5
9_1
66 years, female
358.9
2_1
77 years, female
356.7
348_1
84 years, male
354.4
352_1
62 years, male
349.0
246_1
77 years, male
342.3
35_1
74 years, female
341.8
468_1
89 years, male
339.6
266_1
85 years, male
338.0
293_1
68 years, female
334.2
18_1
88 years, male
333.1
153_1
70 years, female
333.1
115_1
83 years, male
327.4
229_1
69 years, female
326.0
145_1
84 years, male
319.2
315_1
62 years, female
316.1
518_1
75 years, female
310.5
322_1
76 years, male
310.1
350_1
84 years, female
306.0
99_1
64 years, male
303.1
413_1
59 years, female
299.8
425_1
59 years, female
299.1
172_1
72 years, female
298.4
237_1
82 years, male
297.1
480_1
63 years, male
296.6
375_1
74 years, female
291.2
389_1
86 years, female
290.2
286_1
68 years, female
289.2
42_1
85 years, male
287.6
120_1
70 years, female
287.0
355_1
70 years, female
284.3
406_1
79 years, male
280.8
386_1
76 years, male
280.3
319_1
81 years, male
276.7
317_1
60 years, male
270.8
292_1
71 years, male
270.6
405_1
91 years, male
268.0
137_1
83 years, male
267.1
308_1
70 years, female
266.8
109_1
81 years, female
261.3
335_1
73 years, female
260.0
243_1
75 years, male
256.9
173_1
67 years, male
255.5
503_1
68 years, male
252.4
396_1
62 years, male
251.0
316_1
62 years, male
250.3
189_1
76 years, male
249.1
17_1
71 years, male
248.4
291_1
76 years, male
247.3
41_1
94 years, female
246.6
517_1
88 years, male
244.0
218_1
71 years, female
242.6
265_1
87 years, male
241.0
320_1
89 years, female
241.0
384_1
83 years, male
238.8
254_1
77 years, female
237.6
177_1
74 years, male
236.9
318_1
68 years, male
234.8
376_1
75 years, female
224.3
349_1
83 years, male
219.5
404_1
82 years, female
216.0
354_1
81 years, female
204.8
351_1
91 years, male
204.1
377_1
82 years, female
201.5
353_1
82 years, female
195.7
163_1
78 years, male
190.0
394_1
75 years, female
188.7
379_1
60 years, male
187.1
4_1
88 years, female
179.3
356_1
87 years, female
175.7
314_1
67 years, male
164.6
288_1
66 years, female
163.1
501_1
88 years, male
159.4
264_1
73 years, female
156.9
506_1
65 years, male
125.4
295_1
61 years, female
122.1
452_1
88 years, female
119.3
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.