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PCNP
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.9 nTPM
HPA:43.9 nTPM
GTEx:53.3 nTPM
FANTOM5:91.3 Scaled Tags Per Million
Pig:72.3 nTPM
Mouse:64.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.6
1870 Female, age 42, unknown 46.4
2219 Male, age 76, both hemispheres 44.9
1833 Male, age 53, unknown 42.9
2411 Female, age 72, unknown 42.9
2019 Male, age 18, unknown 41.8
1830 Male, age 51, unknown 41.2
2666 Male, age 74, left hemisphere 40.3
1827 Male, age 72, unknown 40.2
2586 Male, age 75, left hemisphere 39.7
2828 Female, age 72, unknown 35.5
Dorsal raphe nucleus
nTPM: 40.7
2750 Male, age 76, both hemispheres 41.7
2047 Male, age 72, unknown 41.1
1828 Male, age 53, unknown 40.7
2016 Female, age 72, unknown 40.7
2298 Female, age 72, unknown 39.1
Inferior colliculus
nTPM: 43.9
2097 Female, age 72, unknown 50.7
1890 Male, age 53, unknown 43.4
1848 Female, age 42, unknown 42.3
2849 Male, age 72, unknown 39.2
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Pedunculopontine tegmental nucleus
nTPM: 43.4
2334 Male, age 80, both hemispheres 44.2
1921 Female, age 85, both hemispheres 43.7
2338 Male, age 61, both hemispheres 42.3
Periaquaductal grey, anterior
nTPM: 42.8
2502 Female, age 75, unknown 44.2
1947 Male, age 18, unknown 44.1
1795 Male, age 51, unknown 40.1
Periaquaductal grey, dorsal
nTPM: 42.2
2850 Male, age 76, both hemispheres 43.1
2464 Female, age 72, unknown 42.5
1831 Male, age 72, unknown 42.2
1840 Male, age 53, unknown 41.2
Periaquaductal grey, lateral
nTPM: 39.5
2272 Male, age 74, both hemispheres 40.5
2053 Male, age 18, unknown 39.7
2140 Male, age 76, both hemispheres 38.3
Pretectal area
nTPM: 42.3
1816 Male, age 51, unknown 46.1
1944 Female, age 72, unknown 46.1
2273 Male, age 74, both hemispheres 43.4
2007 Male, age 72, unknown 42.8
1815 Male, age 53, unknown 42.5
1817 Female, age 42, unknown 42.0
2825 Male, age 18, unknown 41.8
2224 Female, age 72, unknown 41.6
2667 Female, age 75, unknown 41.6
2316 Male, age 76, right hemisphere 40.9
2407 Male, age 75, both hemispheres 36.8
Red nucleus
nTPM: 40.7
1821 Female, age 72, unknown 45.5
1954 Female, age 42, unknown 43.6
1865 Male, age 51, unknown 42.8
2227 Male, age 72, unknown 42.4
1904 Male, age 53, unknown 40.3
2769 Male, age 72, unknown 40.2
2823 Male, age 76, right hemisphere 39.8
2503 Female, age 72, unknown 39.7
2725 Female, age 75, unknown 39.5
2785 Male, age 18, unknown 39.0
2584 Male, age 75, left hemisphere 38.2
2588 Male, age 74, left hemisphere 36.9
Substantia nigra
nTPM: 43.6
2241 Male, age 72, unknown 51.6
2409 Female, age 72, unknown 46.2
1889 Female, age 72, unknown 45.2
2699 Male, age 18, unknown 44.9
1916 Female, age 42, unknown 43.2
1851 Male, age 51, unknown 42.3
1941 Male, age 53, unknown 41.5
2583 Male, age 75, right hemisphere 40.7
2590 Female, age 75, unknown 40.6
2665 Male, age 74, both hemispheres 39.8
Superior colliculus
nTPM: 42.1
2587 Male, age 74, left hemisphere 47.2
2668 Female, age 75, unknown 45.2
1796 Male, age 53, unknown 43.5
1895 Male, age 76, right hemisphere 43.1
2087 Female, age 72, unknown 42.6
1913 Female, age 42, unknown 41.6
2261 Male, age 18, unknown 40.6
2664 Male, age 75, both hemispheres 39.6
1839 Male, age 51, unknown 39.0
1995 Male, age 72, unknown 38.7
Ventral tegmental area
nTPM: 40.6
1915 Female, age 42, unknown 41.9
1942 Male, age 51, unknown 41.6
2223 Female, age 72, unknown 40.6
2218 Male, age 76, both hemispheres 40.5
2021 Male, age 53, unknown 40.2
2410 Female, age 72, unknown 38.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 139

Max nTPM: 102.9
Min nTPM: 30.8
Std nTPM: 13.3
Median nTPM: 51.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 102.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 100.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 97.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 87.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 81.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 77.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 77.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 74.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 73.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 72.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.3
FF:10158-103A5 76 years, female 91.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.3
Pig sample Sample description nTPM
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 81.3
Min nTPM: 66.6
Sample A Female 81.3
Sample B Female 72.6
Sample C Male 66.6
Sample D Male 68.6
Periaqueductal gray
nTPM: 55.7
Samples: 3

Max nTPM: 56.6
Min nTPM: 55.1
Sample B Female 56.6
Sample C Male 55.4
Sample D Male 55.1
Substantia nigra
nTPM: 66.2
Samples: 4

Max nTPM: 75.7
Min nTPM: 57.6
Sample A Female 75.7
Sample B Female 57.6
Sample C Male 67.6
Sample D Male 63.7
Superior colliculi
nTPM: 64.5
Samples: 4

Max nTPM: 71.8
Min nTPM: 46.1
Sample A Female 71.8
Sample B Female 46.1
Sample C Male 68.8
Sample D Male 71.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.9
Samples: 4

Max nTPM: 71.0
Min nTPM: 59.0
Sample A Male 59.0
Sample B Male 70.0
Sample C Female 71.0
Sample D Female 59.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73514797 Antisense, RP_051121_03_B05, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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