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SLC27A5
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:36.3 nTPM
HPA:36.3 nTPM
GTEx:42.3 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA007292Antibody CAB056160Antibody CAB068239
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.9
1854 Male, age 80, left hemisphere 37.4
1857 Female, age 85, left hemisphere 37.2
2290 Female, age 72, unknown 36.7
2289 Male, age 61, right hemisphere 36.2
2846 Female, age 79, unknown 36.2
1781 Male, age 74, unknown 35.8
2481 Female, age 94, left hemisphere 34.9
2288 Male, age 75, left hemisphere 32.9
Claustrum
nTPM: 35.2
2568 Male, age 61, both hemispheres 37.8
2491 Male, age 75, both hemispheres 36.9
2645 Female, age 72, unknown 35.9
2198 Male, age 80, both hemispheres 35.4
1956 Male, age 74, unknown 35.1
2392 Female, age 94, both hemispheres 34.9
2196 Female, age 79, unknown 34.7
2284 Female, age 91, both hemispheres 33.1
2292 Female, age 85, both hemispheres 32.8
Globus pallidus, externus
nTPM: 36.3
1996 Male, age 80, right hemisphere 38.5
2567 Female, age 72, unknown 36.5
2772 Female, age 79, unknown 35.9
2646 Male, age 61, right hemisphere 35.8
2395 Male, age 75, both hemispheres 34.7
Globus pallidus, internus
nTPM: 34.6
2287 Male, age 75, right hemisphere 35.7
2483 Female, age 94, right hemisphere 35.6
2037 Male, age 80, right hemisphere 35.3
1818 Male, age 74, unknown 34.7
2778 Female, age 91, both hemispheres 34.5
2566 Female, age 72, unknown 33.5
2111 Female, age 85, right hemisphere 33.2
Nucleus accumbens
nTPM: 35.3
1806 Female, age 85, left hemisphere 37.3
2824 Male, age 61, right hemisphere 37.1
2698 Female, age 72, unknown 36.3
1783 Male, age 74, unknown 36.1
1856 Female, age 91, right hemisphere 35.8
2286 Male, age 75, left hemisphere 34.4
2732 Male, age 80, right hemisphere 34.3
2391 Female, age 94, left hemisphere 31.3
Nucleus basalis of Meynert
nTPM: 35.9
2569 Male, age 61, both hemispheres 37.2
2484 Female, age 94, left hemisphere 36.8
2821 Male, age 75, both hemispheres 35.6
2393 Male, age 80, right hemisphere 34.2
Nucleus of the diagonal band
nTPM: 35.0
1812 Female, age 91, both hemispheres 35.6
2195 Female, age 85, both hemispheres 35.1
1979 Male, age 74, unknown 34.9
2775 Male, age 80, right hemisphere 34.8
2029 Male, age 61, right hemisphere 34.6
Olfactory tubercle
nTPM: 34.5
1846 Male, age 80, right hemisphere 34.8
2856 Male, age 75, right hemisphere 34.6
2487 Female, age 94, left hemisphere 34.3
1998 Female, age 91, both hemispheres 34.2
Putamen
nTPM: 35.1
1937 Female, age 91, right hemisphere 36.4
1838 Male, age 80, right hemisphere 36.1
2489 Female, age 72, unknown 36.1
2466 Female, age 79, unknown 35.2
2482 Female, age 94, left hemisphere 34.2
2647 Male, age 75, left hemisphere 33.9
1829 Male, age 74, unknown 33.3
Septal nuclei
nTPM: 33.9
2059 Female, age 85, both hemispheres 34.7
1960 Male, age 74, unknown 34.5
2199 Male, age 80, right hemisphere 34.3
2031 Female, age 72, unknown 34.1
2629 Female, age 94, right hemisphere 33.7
2009 Female, age 91, both hemispheres 33.5
2394 Male, age 61, left hemisphere 32.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.6
Samples: 246

Max nTPM: 132.0
Min nTPM: 10.9
Std nTPM: 12.6
Median nTPM: 34.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 132.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 92.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 77.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 69.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 64.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 62.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 61.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 58.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 58.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 57.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 56.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.3
Samples: 246

Max nTPM: 125.7
Min nTPM: 8.2
Std nTPM: 15.7
Median nTPM: 39.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 125.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 115.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 96.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 83.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 82.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 77.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 77.4
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 75.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 73.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 73.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 73.2
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Brain - Putamen (basal ganglia)
Average nTPM: 37.8
Samples: 205

Max nTPM: 89.8
Min nTPM: 14.0
Std nTPM: 11.7
Median nTPM: 37.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 89.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 89.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 83.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 66.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 63.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 63.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 62.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 62.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 60.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 58.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 57.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.0
FF:10164-103B2 76 years, female 21.0
Globus pallidus
Scaled Tags Per Million: 12.6
FF:10161-103A8 76 years, female 13.3
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 10.3
FF:10037-101F1 23-56 years, mixed 10.3
Putamen
Scaled Tags Per Million: 15.6
FF:10176-103C5 60 years, female 15.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.4
Pig sample Sample description nTPM
Caudate
nTPM: 1.4
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.1
Sample A Female 1.5
Sample B Female 1.4
Sample C Male 1.1
Sample D Male 1.5
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.7
Sample A Female 1.2
Sample B Female 1.3
Sample C Male 0.7
Sample D Male 1.2
Septum
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.8
Sample A Female 1.0
Sample B Female 1.4
Sample C Male 0.8
Sample D Male 1.2
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 1.3
Min nTPM: 1.2
Sample A Female 1.3
Sample B Female 1.2
Sample C Male 1.2
Sample D Male 1.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68203458 Antisense, RP_041208_01_A05, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.2
68203458 Antisense, RP_041208_01_A05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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