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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.5 nTPM
HPA:20.5 nTPM
GTEx:22.9 nTPM
FANTOM5:213.7 Scaled Tags Per Million
Pig:51.8 nTPM
Mouse:184.8 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.6
2288 Male, age 75, left hemisphere 22.7
2846 Female, age 79, unknown 22.0
1857 Female, age 85, left hemisphere 21.1
1854 Male, age 80, left hemisphere 20.1
2290 Female, age 72, unknown 20.1
1781 Male, age 74, unknown 17.5
2481 Female, age 94, left hemisphere 17.4
2289 Male, age 61, right hemisphere 15.6
Claustrum
nTPM: 14.5
2392 Female, age 94, both hemispheres 20.8
1956 Male, age 74, unknown 15.8
2198 Male, age 80, both hemispheres 15.8
2568 Male, age 61, both hemispheres 15.7
2196 Female, age 79, unknown 15.2
2284 Female, age 91, both hemispheres 13.6
2491 Male, age 75, both hemispheres 13.6
2292 Female, age 85, both hemispheres 10.2
2645 Female, age 72, unknown 9.7
Globus pallidus, externus
nTPM: 12.2
2395 Male, age 75, both hemispheres 17.4
2772 Female, age 79, unknown 15.8
1996 Male, age 80, right hemisphere 11.2
2646 Male, age 61, right hemisphere 9.3
2567 Female, age 72, unknown 7.3
Globus pallidus, internus
nTPM: 14.4
2287 Male, age 75, right hemisphere 22.1
2483 Female, age 94, right hemisphere 19.2
2778 Female, age 91, both hemispheres 15.8
1818 Male, age 74, unknown 13.6
2037 Male, age 80, right hemisphere 11.8
2111 Female, age 85, right hemisphere 9.8
2566 Female, age 72, unknown 8.8
Nucleus accumbens
nTPM: 20.5
1856 Female, age 91, right hemisphere 29.8
1806 Female, age 85, left hemisphere 23.1
2824 Male, age 61, right hemisphere 23.0
1783 Male, age 74, unknown 21.8
2286 Male, age 75, left hemisphere 20.0
2698 Female, age 72, unknown 19.8
2391 Female, age 94, left hemisphere 14.3
2732 Male, age 80, right hemisphere 12.5
Nucleus basalis of Meynert
nTPM: 16.1
2484 Female, age 94, left hemisphere 20.0
2393 Male, age 80, right hemisphere 19.2
2821 Male, age 75, both hemispheres 16.8
2569 Male, age 61, both hemispheres 8.3
Nucleus of the diagonal band
nTPM: 19.9
1812 Female, age 91, both hemispheres 23.2
2775 Male, age 80, right hemisphere 21.7
2029 Male, age 61, right hemisphere 20.1
2195 Female, age 85, both hemispheres 17.8
1979 Male, age 74, unknown 16.9
Olfactory tubercle
nTPM: 20.0
1846 Male, age 80, right hemisphere 22.0
1998 Female, age 91, both hemispheres 21.6
2856 Male, age 75, right hemisphere 19.7
2487 Female, age 94, left hemisphere 16.9
Putamen
nTPM: 18.7
1937 Female, age 91, right hemisphere 25.4
2466 Female, age 79, unknown 23.7
1838 Male, age 80, right hemisphere 21.8
1829 Male, age 74, unknown 20.2
2482 Female, age 94, left hemisphere 14.9
2647 Male, age 75, left hemisphere 13.8
2489 Female, age 72, unknown 10.9
Septal nuclei
nTPM: 16.7
2031 Female, age 72, unknown 23.7
1960 Male, age 74, unknown 19.4
2009 Female, age 91, both hemispheres 19.2
2629 Female, age 94, right hemisphere 14.2
2199 Male, age 80, right hemisphere 13.8
2394 Male, age 61, left hemisphere 13.8
2059 Female, age 85, both hemispheres 12.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.6
Samples: 246

Max nTPM: 81.8
Min nTPM: 8.4
Std nTPM: 8.0
Median nTPM: 20.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 81.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 48.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 43.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 42.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 38.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 37.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 36.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 35.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 35.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.9
Samples: 246

Max nTPM: 49.4
Min nTPM: 8.7
Std nTPM: 7.3
Median nTPM: 22.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 49.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 45.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 44.0
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 41.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 40.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 39.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 39.3
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 39.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 37.5
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 36.5
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 36.4
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Brain - Putamen (basal ganglia)
Average nTPM: 20.2
Samples: 205

Max nTPM: 46.4
Min nTPM: 6.5
Std nTPM: 7.0
Median nTPM: 19.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 46.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 44.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 43.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 41.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 37.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 35.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 34.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 33.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 33.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 31.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 31.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 145.8
FF:10164-103B2 76 years, female 145.8
Globus pallidus
Scaled Tags Per Million: 141.1
FF:10175-103C4 60 years, female 213.9
FF:10161-103A8 76 years, female 68.2
Nucleus accumbens
Scaled Tags Per Million: 174.0
FF:10037-101F1 23-56 years, mixed 174.0
Putamen
Scaled Tags Per Million: 213.7
FF:10176-103C5 60 years, female 213.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 51.8
Pig sample Sample description nTPM
Caudate
nTPM: 40.9
Samples: 4

Max nTPM: 44.9
Min nTPM: 34.0
Sample A Female 43.3
Sample B Female 34.0
Sample C Male 44.9
Sample D Male 41.2
Putamen
nTPM: 51.8
Samples: 4

Max nTPM: 80.2
Min nTPM: 39.6
Sample A Female 42.0
Sample B Female 39.6
Sample C Male 80.2
Sample D Male 45.5
Septum
nTPM: 51.3
Samples: 4

Max nTPM: 59.8
Min nTPM: 43.2
Sample A Female 47.5
Sample B Female 43.2
Sample C Male 59.8
Sample D Male 54.7
Ventral pallidum
nTPM: 44.6
Samples: 4

Max nTPM: 52.9
Min nTPM: 39.3
Sample A Female 44.4
Sample B Female 41.6
Sample C Male 52.9
Sample D Male 39.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 184.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 184.8
Samples: 4

Max nTPM: 197.8
Min nTPM: 177.1
Sample A Male 197.8
Sample B Male 185.9
Sample C Female 178.5
Sample D Female 177.1
Septum
nTPM: 148.8
Samples: 4

Max nTPM: 157.1
Min nTPM: 140.8
Sample A Male 140.8
Sample B Male 157.1
Sample C Female 146.7
Sample D Female 150.5
Ventral forebrain
nTPM: 159.8
Samples: 4

Max nTPM: 164.8
Min nTPM: 156.7
Sample A Male 156.7
Sample B Male 159.0
Sample C Female 164.8
Sample D Female 158.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
69169714 Antisense, RP_050321_04_B01, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 0.8
69169714 Antisense, RP_050321_04_B01, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.