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ABCB1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.4 nTPM
HPA:14.4 nTPM
GTEx:9.7 nTPM
FANTOM5:55.0 Scaled Tags Per Million
Pig:1.9 nTPM
Mouse:20.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.5
2666 Male, age 74, left hemisphere 17.7
2019 Male, age 18, unknown 13.2
1870 Female, age 42, unknown 13.1
1830 Male, age 51, unknown 11.9
1833 Male, age 53, unknown 11.9
2411 Female, age 72, unknown 11.8
2828 Female, age 72, unknown 11.6
1827 Male, age 72, unknown 9.3
2219 Male, age 76, both hemispheres 9.0
2586 Male, age 75, left hemisphere 6.0
Dorsal raphe nucleus
nTPM: 12.4
2047 Male, age 72, unknown 15.2
2750 Male, age 76, both hemispheres 13.3
1828 Male, age 53, unknown 12.4
2298 Female, age 72, unknown 10.8
2016 Female, age 72, unknown 10.4
Inferior colliculus
nTPM: 12.2
2097 Female, age 72, unknown 14.1
1890 Male, age 53, unknown 13.2
1848 Female, age 42, unknown 11.5
2849 Male, age 72, unknown 9.9
Median raphe nucleus
nTPM: 13.6
2220 Male, age 76, midline 13.6
Pedunculopontine tegmental nucleus
nTPM: 12.5
2334 Male, age 80, both hemispheres 13.4
2338 Male, age 61, both hemispheres 12.5
1921 Female, age 85, both hemispheres 11.5
Periaquaductal grey, anterior
nTPM: 11.4
2502 Female, age 75, unknown 13.4
1947 Male, age 18, unknown 12.0
1795 Male, age 51, unknown 8.6
Periaquaductal grey, dorsal
nTPM: 9.5
2464 Female, age 72, unknown 11.8
1831 Male, age 72, unknown 9.3
2850 Male, age 76, both hemispheres 9.2
1840 Male, age 53, unknown 7.8
Periaquaductal grey, lateral
nTPM: 9.1
2053 Male, age 18, unknown 9.8
2272 Male, age 74, both hemispheres 9.5
2140 Male, age 76, both hemispheres 8.1
Pretectal area
nTPM: 10.0
1817 Female, age 42, unknown 13.5
2007 Male, age 72, unknown 11.7
1815 Male, age 53, unknown 11.3
1944 Female, age 72, unknown 10.9
2667 Female, age 75, unknown 10.5
1816 Male, age 51, unknown 10.1
2316 Male, age 76, right hemisphere 9.8
2224 Female, age 72, unknown 9.6
2825 Male, age 18, unknown 9.1
2273 Male, age 74, both hemispheres 7.8
2407 Male, age 75, both hemispheres 6.0
Red nucleus
nTPM: 14.4
1954 Female, age 42, unknown 18.4
1821 Female, age 72, unknown 18.0
2588 Male, age 74, left hemisphere 16.3
1904 Male, age 53, unknown 15.9
2503 Female, age 72, unknown 15.4
2769 Male, age 72, unknown 14.7
2227 Male, age 72, unknown 14.6
1865 Male, age 51, unknown 14.4
2823 Male, age 76, right hemisphere 13.3
2785 Male, age 18, unknown 12.6
2725 Female, age 75, unknown 10.8
2584 Male, age 75, left hemisphere 8.2
Substantia nigra
nTPM: 11.6
2665 Male, age 74, both hemispheres 20.7
1889 Female, age 72, unknown 12.7
1851 Male, age 51, unknown 11.9
2241 Male, age 72, unknown 11.2
2409 Female, age 72, unknown 10.9
1916 Female, age 42, unknown 10.7
1941 Male, age 53, unknown 10.3
2590 Female, age 75, unknown 9.9
2699 Male, age 18, unknown 9.4
2583 Male, age 75, right hemisphere 7.9
Superior colliculus
nTPM: 9.9
2587 Male, age 74, left hemisphere 13.1
1895 Male, age 76, right hemisphere 11.4
2087 Female, age 72, unknown 11.4
2668 Female, age 75, unknown 10.7
1839 Male, age 51, unknown 10.0
2261 Male, age 18, unknown 9.9
1913 Female, age 42, unknown 9.6
1995 Male, age 72, unknown 8.9
1796 Male, age 53, unknown 8.7
2664 Male, age 75, both hemispheres 5.6
Ventral tegmental area
nTPM: 11.4
2223 Female, age 72, unknown 12.7
2410 Female, age 72, unknown 12.4
1942 Male, age 51, unknown 11.5
2218 Male, age 76, both hemispheres 11.2
2021 Male, age 53, unknown 10.8
1915 Female, age 42, unknown 9.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 63.0
Min nTPM: 0.9
Std nTPM: 7.4
Median nTPM: 8.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 63.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 35.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 34.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 30.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 29.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 24.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 21.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 19.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 18.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 18.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.0
FF:10158-103A5 76 years, female 55.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.9
Pig sample Sample description nTPM
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.9
Sample A Female 8.9
Sample B Female 6.9
Sample C Male 8.6
Sample D Male 9.0
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 5.8
Min nTPM: 4.8
Sample B Female 5.8
Sample C Male 5.6
Sample D Male 4.8
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.0
Sample A Female 8.2
Sample B Female 10.6
Sample C Male 8.0
Sample D Male 10.5
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 13.2
Min nTPM: 9.3
Sample A Female 9.7
Sample B Female 13.2
Sample C Male 9.3
Sample D Male 11.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.8
Sample A Male 1.1
Sample B Male 0.8
Sample C Female 0.9
Sample D Female 0.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
78534536 Antisense, RP_070620_02_C04, Mouse strain C57BL/6J (56 days, male) 0.1
70724511 Antisense, RP_050705_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.1
78534536 Antisense, RP_070620_02_C04, Mouse strain C57BL/6J (56 days, male) 0.1
70724511 Antisense, RP_050705_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.