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POMGNT1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:45.9 nTPM
HPA:45.9 nTPM
GTEx:40.4 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:52.8 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044518
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.9
Sample id Sample description nTPM
Hippocampus
nTPM: 43.8
1855 Male, age 76, left hemisphere 44.7
1911 Female, age 85, right hemisphere 44.6
1898 Male, age 80, left hemisphere 44.3
2621 Female, age 67, right hemisphere 43.7
2529 Female, age 94, left hemisphere 42.9
2148 Female, age 91, left hemisphere 42.6
Dentate gyrus
nTPM: 43.5
2530 Female, age 94, left hemisphere 47.1
2010 Male, age 76, both hemispheres 43.9
2246 Female, age 85, both hemispheres 42.8
2528 Male, age 74, both hemispheres 42.5
2531 Female, age 67, both hemispheres 42.5
1927 Female, age 91, both hemispheres 42.0
Entorhinal gyrus
nTPM: 45.9
2613 Female, age 94, left hemisphere 47.1
2764 Male, age 80, right hemisphere 46.8
2117 Female, age 91, right hemisphere 46.4
1787 Male, age 76, left hemisphere 46.0
2686 Male, age 75, right hemisphere 44.9
1938 Female, age 85, left hemisphere 44.0
Hippocampus, CA1
nTPM: 43.3
2749 Male, age 80, left hemisphere 44.6
2527 Male, age 74, both hemispheres 44.4
2082 Female, age 91, right hemisphere 43.4
1873 Female, age 85, both hemispheres 42.6
2045 Male, age 76, both hemispheres 41.6
Hippocampus, CA2
nTPM: 44.6
1892 Male, age 76, both hemispheres 47.1
2437 Female, age 94, left hemisphere 45.6
2249 Male, age 74, both hemispheres 44.7
1963 Male, age 80, left hemisphere 44.1
2113 Female, age 91, right hemisphere 43.3
1940 Female, age 85, left hemisphere 42.9
Hippocampus, CA3
nTPM: 43.7
1867 Male, age 76, both hemispheres 46.0
1891 Female, age 85, both hemispheres 45.4
2137 Male, age 80, left hemisphere 44.5
2436 Male, age 74, both hemispheres 43.8
2861 Female, age 67, both hemispheres 41.8
2620 Female, age 94, left hemisphere 41.0
Parahippocampal cortex
nTPM: 43.9
2692 Male, age 74, both hemispheres 45.4
2532 Female, age 72, left hemisphere 44.8
1933 Female, age 85, both hemispheres 44.2
1850 Male, age 80, both hemispheres 44.1
2693 Female, age 94, both hemispheres 44.0
2622 Female, age 67, right hemisphere 43.9
2018 Male, age 76, both hemispheres 43.5
1990 Female, age 91, right hemisphere 43.4
2245 Female, age 91, both hemispheres 43.2
2250 Female, age 67, right hemisphere 42.7
Perirhinal gyrus
nTPM: 44.4
2521 Female, age 94, right hemisphere 46.0
2848 Male, age 76, right hemisphere 45.3
1847 Female, age 91, left hemisphere 44.2
1794 Male, age 80, right hemisphere 43.8
1841 Female, age 85, right hemisphere 42.8
Subiculum
nTPM: 45.1
1901 Male, age 80, both hemispheres 47.2
2042 Male, age 76, both hemispheres 46.2
1977 Female, age 85, both hemispheres 45.1
2438 Female, age 94, left hemisphere 44.6
2619 Male, age 74, both hemispheres 44.2
2729 Female, age 91, right hemisphere 43.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.4
Samples: 197

Max nTPM: 100.3
Min nTPM: 20.1
Std nTPM: 9.2
Median nTPM: 39.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 100.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 68.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 68.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 67.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 65.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 60.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 59.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 57.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 55.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 54.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 53.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.5
FF:10153-102I9 76 years, female 31.2
FF:10169-103B7 60 years, female 17.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.9
Samples: 4

Max nTPM: 33.3
Min nTPM: 18.2
Sample A Female 33.3
Sample B Female 26.1
Sample C Male 30.0
Sample D Male 18.2
Entorhinal cortex
nTPM: 25.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 21.3
Sample A Female 25.7
Sample B Female 25.0
Sample C Male 28.0
Sample D Male 21.3
Subiculum
nTPM: 24.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 19.0
Sample A Female 32.3
Sample B Female 22.6
Sample C Male 22.2
Sample D Male 19.0
Ventral hippocampus
nTPM: 25.0
Samples: 4

Max nTPM: 29.8
Min nTPM: 19.2
Sample A Female 24.7
Sample B Female 19.2
Sample C Male 29.8
Sample D Male 26.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.9
Samples: 4

Max nTPM: 52.2
Min nTPM: 49.5
Sample A Male 49.9
Sample B Male 52.0
Sample C Female 52.2
Sample D Female 49.5
Hippocampal formation
nTPM: 52.8
Samples: 4

Max nTPM: 58.7
Min nTPM: 48.6
Sample A Male 51.1
Sample B Male 48.6
Sample C Female 52.7
Sample D Female 58.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
532651 Antisense, RP_040825_01_A07, Mouse strain C57BL/6J (56 days, male) 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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