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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:45.4 nTPM
HPA:45.4 nTPM
GTEx:34.9 nTPM
FANTOM5:125.6 Scaled Tags Per Million
Pig:71.7 nTPM
Mouse:99.8 nTPM
Allen mouse:12.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA072321Antibody CAB026298
Glial cells MediumMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 45.4
Sample id Sample description nTPM
Hippocampus
nTPM: 40.0
1898 Male, age 80, left hemisphere 60.6
1855 Male, age 76, left hemisphere 40.3
2621 Female, age 67, right hemisphere 39.9
2148 Female, age 91, left hemisphere 34.1
2529 Female, age 94, left hemisphere 33.3
1911 Female, age 85, right hemisphere 31.7
Dentate gyrus
nTPM: 44.4
2530 Female, age 94, left hemisphere 52.6
2010 Male, age 76, both hemispheres 48.9
1927 Female, age 91, both hemispheres 48.5
2246 Female, age 85, both hemispheres 45.0
2528 Male, age 74, both hemispheres 43.7
2531 Female, age 67, both hemispheres 27.6
Entorhinal gyrus
nTPM: 37.2
2764 Male, age 80, right hemisphere 51.4
1938 Female, age 85, left hemisphere 42.0
2613 Female, age 94, left hemisphere 41.6
1787 Male, age 76, left hemisphere 38.0
2117 Female, age 91, right hemisphere 26.5
2686 Male, age 75, right hemisphere 23.9
Hippocampus, CA1
nTPM: 45.2
2749 Male, age 80, left hemisphere 70.3
1873 Female, age 85, both hemispheres 47.4
2082 Female, age 91, right hemisphere 41.2
2527 Male, age 74, both hemispheres 39.0
2045 Male, age 76, both hemispheres 27.9
Hippocampus, CA2
nTPM: 45.4
1963 Male, age 80, left hemisphere 52.8
1892 Male, age 76, both hemispheres 52.1
2249 Male, age 74, both hemispheres 46.2
1940 Female, age 85, left hemisphere 45.5
2113 Female, age 91, right hemisphere 42.1
2437 Female, age 94, left hemisphere 33.9
Hippocampus, CA3
nTPM: 39.0
2620 Female, age 94, left hemisphere 46.0
2137 Male, age 80, left hemisphere 42.3
2436 Male, age 74, both hemispheres 41.1
1867 Male, age 76, both hemispheres 41.0
2861 Female, age 67, both hemispheres 34.8
1891 Female, age 85, both hemispheres 28.7
Parahippocampal cortex
nTPM: 36.8
2245 Female, age 91, both hemispheres 50.7
1990 Female, age 91, right hemisphere 46.7
1850 Male, age 80, both hemispheres 45.0
2250 Female, age 67, right hemisphere 42.3
1933 Female, age 85, both hemispheres 41.1
2622 Female, age 67, right hemisphere 31.0
2018 Male, age 76, both hemispheres 29.5
2693 Female, age 94, both hemispheres 29.0
2532 Female, age 72, left hemisphere 27.2
2692 Male, age 74, both hemispheres 25.2
Perirhinal gyrus
nTPM: 42.7
1847 Female, age 91, left hemisphere 66.1
1794 Male, age 80, right hemisphere 47.3
2521 Female, age 94, right hemisphere 38.6
1841 Female, age 85, right hemisphere 32.8
2848 Male, age 76, right hemisphere 28.5
Subiculum
nTPM: 29.8
1977 Female, age 85, both hemispheres 39.1
1901 Male, age 80, both hemispheres 33.5
2619 Male, age 74, both hemispheres 30.3
2729 Female, age 91, right hemisphere 28.0
2438 Female, age 94, left hemisphere 24.3
2042 Male, age 76, both hemispheres 23.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.9
Samples: 197

Max nTPM: 139.6
Min nTPM: 6.5
Std nTPM: 22.6
Median nTPM: 28.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 139.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 110.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 108.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 93.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 93.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 87.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 85.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 81.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 80.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 80.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 77.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 125.6
FF:10169-103B7 60 years, female 182.0
FF:10153-102I9 76 years, female 69.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 71.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 68.5
Samples: 4

Max nTPM: 94.7
Min nTPM: 37.0
Sample A Female 94.7
Sample B Female 89.5
Sample C Male 37.0
Sample D Male 52.9
Entorhinal cortex
nTPM: 56.4
Samples: 4

Max nTPM: 63.7
Min nTPM: 47.9
Sample A Female 63.7
Sample B Female 53.9
Sample C Male 60.2
Sample D Male 47.9
Subiculum
nTPM: 42.8
Samples: 4

Max nTPM: 51.0
Min nTPM: 36.2
Sample A Female 51.0
Sample B Female 36.2
Sample C Male 47.0
Sample D Male 37.1
Ventral hippocampus
nTPM: 71.7
Samples: 4

Max nTPM: 90.9
Min nTPM: 41.2
Sample A Female 90.9
Sample B Female 41.2
Sample C Male 85.0
Sample D Male 69.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 99.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 72.9
Samples: 4

Max nTPM: 81.4
Min nTPM: 59.1
Sample A Male 76.8
Sample B Male 81.4
Sample C Female 74.1
Sample D Female 59.1
Hippocampal formation
nTPM: 99.8
Samples: 4

Max nTPM: 110.3
Min nTPM: 92.7
Sample A Male 92.9
Sample B Male 103.4
Sample C Female 110.3
Sample D Female 92.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.4
69549293 Antisense, RP_050126_02_G03, Mouse strain C57BL/6J (56 days, male) 14.2
74881156 Antisense, RP_060220_01_A05, Mouse strain C57BL/6J (56 days, male) 10.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.