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MTMR2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.4 nTPM
HPA:14.4 nTPM
GTEx:16.5 nTPM
FANTOM5:124.2 Scaled Tags Per Million
Pig:43.3 nTPM
Mouse:59.0 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.4
2411 Female, age 72, unknown 15.6
1870 Female, age 42, unknown 14.9
2019 Male, age 18, unknown 13.7
1833 Male, age 53, unknown 13.5
1830 Male, age 51, unknown 13.1
1827 Male, age 72, unknown 11.7
2828 Female, age 72, unknown 11.3
2666 Male, age 74, left hemisphere 11.0
2219 Male, age 76, both hemispheres 10.2
2586 Male, age 75, left hemisphere 8.6
Dorsal raphe nucleus
nTPM: 10.5
2750 Male, age 76, both hemispheres 13.5
1828 Male, age 53, unknown 10.5
2016 Female, age 72, unknown 10.1
2298 Female, age 72, unknown 9.6
2047 Male, age 72, unknown 8.8
Inferior colliculus
nTPM: 10.4
1890 Male, age 53, unknown 10.9
1848 Female, age 42, unknown 10.6
2097 Female, age 72, unknown 10.5
2849 Male, age 72, unknown 9.4
Median raphe nucleus
nTPM: 10.0
2220 Male, age 76, midline 10.0
Pedunculopontine tegmental nucleus
nTPM: 11.7
2338 Male, age 61, both hemispheres 12.2
2334 Male, age 80, both hemispheres 12.1
1921 Female, age 85, both hemispheres 11.0
Periaquaductal grey, anterior
nTPM: 10.0
2502 Female, age 75, unknown 11.3
1947 Male, age 18, unknown 9.9
1795 Male, age 51, unknown 8.7
Periaquaductal grey, dorsal
nTPM: 8.6
2464 Female, age 72, unknown 9.7
1831 Male, age 72, unknown 9.2
2850 Male, age 76, both hemispheres 8.8
1840 Male, age 53, unknown 6.8
Periaquaductal grey, lateral
nTPM: 9.8
2053 Male, age 18, unknown 10.9
2272 Male, age 74, both hemispheres 10.3
2140 Male, age 76, both hemispheres 8.0
Pretectal area
nTPM: 10.6
2007 Male, age 72, unknown 12.6
1815 Male, age 53, unknown 12.4
1817 Female, age 42, unknown 12.1
1816 Male, age 51, unknown 10.8
2316 Male, age 76, right hemisphere 10.6
1944 Female, age 72, unknown 10.2
2273 Male, age 74, both hemispheres 10.2
2825 Male, age 18, unknown 10.1
2667 Female, age 75, unknown 9.6
2407 Male, age 75, both hemispheres 9.0
2224 Female, age 72, unknown 8.9
Red nucleus
nTPM: 14.4
1821 Female, age 72, unknown 18.6
1865 Male, age 51, unknown 16.3
1904 Male, age 53, unknown 16.2
1954 Female, age 42, unknown 15.4
2503 Female, age 72, unknown 14.7
2769 Male, age 72, unknown 14.3
2227 Male, age 72, unknown 14.2
2785 Male, age 18, unknown 14.2
2823 Male, age 76, right hemisphere 13.9
2588 Male, age 74, left hemisphere 13.7
2725 Female, age 75, unknown 12.4
2584 Male, age 75, left hemisphere 9.5
Substantia nigra
nTPM: 11.2
1889 Female, age 72, unknown 12.6
1851 Male, age 51, unknown 12.3
1916 Female, age 42, unknown 11.8
2409 Female, age 72, unknown 11.4
2590 Female, age 75, unknown 11.2
2583 Male, age 75, right hemisphere 11.1
1941 Male, age 53, unknown 11.0
2241 Male, age 72, unknown 10.6
2665 Male, age 74, both hemispheres 10.0
2699 Male, age 18, unknown 9.7
Superior colliculus
nTPM: 11.3
1913 Female, age 42, unknown 14.5
2587 Male, age 74, left hemisphere 13.1
1995 Male, age 72, unknown 12.2
2668 Female, age 75, unknown 12.1
1895 Male, age 76, right hemisphere 11.6
1839 Male, age 51, unknown 11.0
1796 Male, age 53, unknown 10.6
2261 Male, age 18, unknown 10.6
2087 Female, age 72, unknown 9.4
2664 Male, age 75, both hemispheres 7.6
Ventral tegmental area
nTPM: 11.5
2410 Female, age 72, unknown 14.5
2223 Female, age 72, unknown 13.0
2218 Male, age 76, both hemispheres 11.8
1915 Female, age 42, unknown 10.7
2021 Male, age 53, unknown 9.6
1942 Male, age 51, unknown 9.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.5
Samples: 139

Max nTPM: 48.6
Min nTPM: 6.1
Std nTPM: 5.7
Median nTPM: 15.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 48.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 26.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 26.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 25.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 25.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.2
FF:10158-103A5 76 years, female 124.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.3
Pig sample Sample description nTPM
Midbrain
nTPM: 43.3
Samples: 4

Max nTPM: 60.7
Min nTPM: 33.3
Sample A Female 60.7
Sample B Female 41.8
Sample C Male 37.2
Sample D Male 33.3
Periaqueductal gray
nTPM: 30.7
Samples: 3

Max nTPM: 33.4
Min nTPM: 27.5
Sample B Female 33.4
Sample C Male 27.5
Sample D Male 31.2
Substantia nigra
nTPM: 39.1
Samples: 4

Max nTPM: 49.7
Min nTPM: 27.7
Sample A Female 45.0
Sample B Female 27.7
Sample C Male 33.8
Sample D Male 49.7
Superior colliculi
nTPM: 39.8
Samples: 4

Max nTPM: 47.0
Min nTPM: 26.0
Sample A Female 47.0
Sample B Female 26.0
Sample C Male 43.6
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.0
Samples: 4

Max nTPM: 61.5
Min nTPM: 53.8
Sample A Male 53.8
Sample B Male 60.0
Sample C Female 60.7
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69549617 Antisense, RP_050222_01_B04, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.