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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.8 nTPM
HPA:16.8 nTPM
GTEx:37.7 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:97.2 nTPM
Allen mouse:11.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.0
2289 Male, age 61, right hemisphere 26.1
2288 Male, age 75, left hemisphere 20.8
2290 Female, age 72, unknown 16.1
1857 Female, age 85, left hemisphere 13.5
1781 Male, age 74, unknown 12.3
1854 Male, age 80, left hemisphere 11.9
2846 Female, age 79, unknown 7.6
2481 Female, age 94, left hemisphere 3.8
Claustrum
nTPM: 8.2
2568 Male, age 61, both hemispheres 20.2
2284 Female, age 91, both hemispheres 15.5
2491 Male, age 75, both hemispheres 11.4
2645 Female, age 72, unknown 9.7
2198 Male, age 80, both hemispheres 9.2
2392 Female, age 94, both hemispheres 4.5
2196 Female, age 79, unknown 2.3
2292 Female, age 85, both hemispheres 0.9
1956 Male, age 74, unknown 0.3
Globus pallidus, externus
nTPM: 5.0
2772 Female, age 79, unknown 12.0
2646 Male, age 61, right hemisphere 7.1
2567 Female, age 72, unknown 4.1
1996 Male, age 80, right hemisphere 1.8
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 3.0
1818 Male, age 74, unknown 13.3
2566 Female, age 72, unknown 4.8
2037 Male, age 80, right hemisphere 3.4
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 16.8
1856 Female, age 91, right hemisphere 31.4
2824 Male, age 61, right hemisphere 29.3
1783 Male, age 74, unknown 16.5
2698 Female, age 72, unknown 15.7
1806 Female, age 85, left hemisphere 14.8
2286 Male, age 75, left hemisphere 14.8
2732 Male, age 80, right hemisphere 9.1
2391 Female, age 94, left hemisphere 3.1
Nucleus basalis of Meynert
nTPM: 11.5
2821 Male, age 75, both hemispheres 16.3
2484 Female, age 94, left hemisphere 13.4
2393 Male, age 80, right hemisphere 11.9
2569 Male, age 61, both hemispheres 4.5
Nucleus of the diagonal band
nTPM: 12.1
1979 Male, age 74, unknown 30.9
2029 Male, age 61, right hemisphere 9.0
1812 Female, age 91, both hemispheres 8.7
2775 Male, age 80, right hemisphere 7.3
2195 Female, age 85, both hemispheres 4.5
Olfactory tubercle
nTPM: 9.8
1998 Female, age 91, both hemispheres 15.1
2487 Female, age 94, left hemisphere 10.4
2856 Male, age 75, right hemisphere 10.3
1846 Male, age 80, right hemisphere 3.5
Putamen
nTPM: 12.5
1937 Female, age 91, right hemisphere 24.2
1838 Male, age 80, right hemisphere 19.8
1829 Male, age 74, unknown 13.5
2466 Female, age 79, unknown 11.6
2647 Male, age 75, left hemisphere 6.4
2482 Female, age 94, left hemisphere 6.1
2489 Female, age 72, unknown 5.8
Septal nuclei
nTPM: 11.2
2394 Male, age 61, left hemisphere 26.2
2199 Male, age 80, right hemisphere 18.4
2009 Female, age 91, both hemispheres 9.5
2059 Female, age 85, both hemispheres 7.4
2629 Female, age 94, right hemisphere 6.6
2031 Female, age 72, unknown 5.4
1960 Male, age 74, unknown 5.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.1
Samples: 246

Max nTPM: 74.7
Min nTPM: 4.1
Std nTPM: 16.4
Median nTPM: 30.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 74.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 72.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 72.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 71.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 70.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 69.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 67.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 63.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 61.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 60.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 60.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.7
Samples: 246

Max nTPM: 223.4
Min nTPM: 3.1
Std nTPM: 22.7
Median nTPM: 36.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 223.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 169.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 101.5
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 86.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 85.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 80.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 72.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 72.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 72.2
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 69.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 67.6
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Brain - Putamen (basal ganglia)
Average nTPM: 34.1
Samples: 205

Max nTPM: 74.5
Min nTPM: 2.0
Std nTPM: 18.1
Median nTPM: 34.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 74.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 74.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 73.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 71.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 68.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 66.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 66.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 66.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 65.7
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 65.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 65.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.7
FF:10164-103B2 76 years, female 50.7
Globus pallidus
Scaled Tags Per Million: 23.8
FF:10175-103C4 60 years, female 37.8
FF:10161-103A8 76 years, female 9.7
Nucleus accumbens
Scaled Tags Per Million: 45.4
FF:10037-101F1 23-56 years, mixed 45.4
Putamen
Scaled Tags Per Million: 51.2
FF:10176-103C5 60 years, female 51.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.7
Pig sample Sample description nTPM
Caudate
nTPM: 28.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 24.7
Sample A Female 24.7
Sample B Female 30.4
Sample C Male 31.4
Sample D Male 25.3
Putamen
nTPM: 21.7
Samples: 4

Max nTPM: 24.5
Min nTPM: 18.4
Sample A Female 18.4
Sample B Female 19.6
Sample C Male 24.5
Sample D Male 24.2
Septum
nTPM: 34.7
Samples: 4

Max nTPM: 64.7
Min nTPM: 18.2
Sample A Female 28.3
Sample B Female 27.7
Sample C Male 64.7
Sample D Male 18.2
Ventral pallidum
nTPM: 30.2
Samples: 4

Max nTPM: 55.0
Min nTPM: 20.2
Sample A Female 24.5
Sample B Female 21.1
Sample C Male 55.0
Sample D Male 20.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 97.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.9
Samples: 4

Max nTPM: 89.9
Min nTPM: 51.2
Sample A Male 75.4
Sample B Male 89.9
Sample C Female 51.2
Sample D Female 54.9
Septum
nTPM: 97.2
Samples: 4

Max nTPM: 120.8
Min nTPM: 86.6
Sample A Male 120.8
Sample B Male 87.6
Sample C Female 93.7
Sample D Female 86.6
Ventral forebrain
nTPM: 80.4
Samples: 4

Max nTPM: 104.5
Min nTPM: 63.4
Sample A Male 72.7
Sample B Male 104.5
Sample C Female 80.9
Sample D Female 63.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.9
68924841 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 6.9
70301082 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 4.1
Pallidum
Expression energy: 11.3
70301082 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 11.3
68924841 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 10.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.