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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6998.4 nTPM
HPA:6998.4 nTPM
GTEx:4647.9 nTPM
FANTOM5:2515.1 Scaled Tags Per Million
Pig:727.4 nTPM
Mouse:325.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6998.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6765.4
2586 Male, age 75, left hemisphere 7225.1
2666 Male, age 74, left hemisphere 6824.3
1830 Male, age 51, unknown 6822.6
1870 Female, age 42, unknown 6819.6
2828 Female, age 72, unknown 6814.3
1833 Male, age 53, unknown 6798.6
2411 Female, age 72, unknown 6725.8
2019 Male, age 18, unknown 6692.1
1827 Male, age 72, unknown 6502.2
2219 Male, age 76, both hemispheres 6428.8
Dorsal raphe nucleus
nTPM: 6620.4
2750 Male, age 76, both hemispheres 6780.4
2016 Female, age 72, unknown 6706.9
1828 Male, age 53, unknown 6601.5
2047 Male, age 72, unknown 6536.2
2298 Female, age 72, unknown 6477.1
Inferior colliculus
nTPM: 6515.8
1890 Male, age 53, unknown 6548.5
1848 Female, age 42, unknown 6520.7
2849 Male, age 72, unknown 6516.1
2097 Female, age 72, unknown 6477.9
Median raphe nucleus
nTPM: 6675.5
2220 Male, age 76, midline 6675.5
Pedunculopontine tegmental nucleus
nTPM: 6860.4
2338 Male, age 61, both hemispheres 7551.8
2334 Male, age 80, both hemispheres 6775.6
1921 Female, age 85, both hemispheres 6253.8
Periaquaductal grey, anterior
nTPM: 6580.3
2502 Female, age 75, unknown 6674.5
1795 Male, age 51, unknown 6642.8
1947 Male, age 18, unknown 6423.7
Periaquaductal grey, dorsal
nTPM: 6606.4
1831 Male, age 72, unknown 6727.0
2464 Female, age 72, unknown 6601.7
2850 Male, age 76, both hemispheres 6579.2
1840 Male, age 53, unknown 6517.7
Periaquaductal grey, lateral
nTPM: 6661.8
2053 Male, age 18, unknown 6775.0
2272 Male, age 74, both hemispheres 6608.0
2140 Male, age 76, both hemispheres 6602.3
Pretectal area
nTPM: 6573.4
2407 Male, age 75, both hemispheres 6780.4
1815 Male, age 53, unknown 6740.8
1817 Female, age 42, unknown 6728.5
2825 Male, age 18, unknown 6601.0
2667 Female, age 75, unknown 6526.1
2273 Male, age 74, both hemispheres 6523.9
2316 Male, age 76, right hemisphere 6509.3
2224 Female, age 72, unknown 6477.9
1816 Male, age 51, unknown 6477.0
2007 Male, age 72, unknown 6472.6
1944 Female, age 72, unknown 6469.9
Red nucleus
nTPM: 6998.4
1904 Male, age 53, unknown 7290.4
1954 Female, age 42, unknown 7182.4
1865 Male, age 51, unknown 7134.6
2227 Male, age 72, unknown 7119.9
2769 Male, age 72, unknown 7095.3
1821 Female, age 72, unknown 7083.2
2584 Male, age 75, left hemisphere 7045.0
2503 Female, age 72, unknown 7038.5
2785 Male, age 18, unknown 6848.4
2823 Male, age 76, right hemisphere 6827.3
2725 Female, age 75, unknown 6675.6
2588 Male, age 74, left hemisphere 6639.9
Substantia nigra
nTPM: 6983.0
2699 Male, age 18, unknown 7462.9
1851 Male, age 51, unknown 7349.7
1916 Female, age 42, unknown 7107.7
2590 Female, age 75, unknown 7077.0
2665 Male, age 74, both hemispheres 6938.4
2583 Male, age 75, right hemisphere 6892.5
2409 Female, age 72, unknown 6891.5
2241 Male, age 72, unknown 6833.1
1889 Female, age 72, unknown 6688.8
1941 Male, age 53, unknown 6588.9
Superior colliculus
nTPM: 6742.0
2664 Male, age 75, both hemispheres 7114.5
1995 Male, age 72, unknown 7014.5
1913 Female, age 42, unknown 6922.1
2668 Female, age 75, unknown 6846.7
2587 Male, age 74, left hemisphere 6725.3
1796 Male, age 53, unknown 6684.0
2087 Female, age 72, unknown 6625.8
1839 Male, age 51, unknown 6594.5
2261 Male, age 18, unknown 6582.0
1895 Male, age 76, right hemisphere 6310.7
Ventral tegmental area
nTPM: 6987.9
2223 Female, age 72, unknown 7413.3
1915 Female, age 42, unknown 7161.5
2021 Male, age 53, unknown 6972.1
2218 Male, age 76, both hemispheres 6870.8
2410 Female, age 72, unknown 6867.6
1942 Male, age 51, unknown 6641.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4647.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4647.9
Samples: 139

Max nTPM: 10545.1
Min nTPM: 1040.8
Std nTPM: 1909.4
Median nTPM: 4302.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 10545.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9650.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 9075.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 9037.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 8816.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8784.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 8650.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 8634.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 8335.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 8332.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 8233.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2515.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2515.1
FF:10158-103A5 76 years, female 2515.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 727.4
Pig sample Sample description nTPM
Midbrain
nTPM: 727.4
Samples: 4

Max nTPM: 1525.7
Min nTPM: 374.1
Sample A Female 1525.7
Sample B Female 592.1
Sample C Male 417.7
Sample D Male 374.1
Periaqueductal gray
nTPM: 404.1
Samples: 3

Max nTPM: 429.1
Min nTPM: 391.0
Sample B Female 429.1
Sample C Male 392.2
Sample D Male 391.0
Substantia nigra
nTPM: 720.4
Samples: 4

Max nTPM: 932.1
Min nTPM: 550.8
Sample A Female 932.1
Sample B Female 619.8
Sample C Male 550.8
Sample D Male 779.0
Superior colliculi
nTPM: 677.1
Samples: 4

Max nTPM: 911.0
Min nTPM: 531.2
Sample A Female 911.0
Sample B Female 706.6
Sample C Male 531.2
Sample D Male 559.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 325.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 325.7
Samples: 4

Max nTPM: 387.5
Min nTPM: 278.8
Sample A Male 387.5
Sample B Male 306.0
Sample C Female 278.8
Sample D Female 330.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.