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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA:23.9 nTPM
GTEx:24.1 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:50.0 nTPM
Mouse:33.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
2019 Male, age 18, unknown 24.7
1870 Female, age 42, unknown 23.9
2411 Female, age 72, unknown 22.5
1827 Male, age 72, unknown 21.5
1830 Male, age 51, unknown 21.2
1833 Male, age 53, unknown 21.2
2828 Female, age 72, unknown 20.5
2666 Male, age 74, left hemisphere 20.4
2219 Male, age 76, both hemispheres 20.2
2586 Male, age 75, left hemisphere 18.9
Dorsal raphe nucleus
nTPM: 21.4
2750 Male, age 76, both hemispheres 24.1
1828 Male, age 53, unknown 21.6
2047 Male, age 72, unknown 21.0
2298 Female, age 72, unknown 20.7
2016 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 22.1
2097 Female, age 72, unknown 25.6
1890 Male, age 53, unknown 23.3
1848 Female, age 42, unknown 21.8
2849 Male, age 72, unknown 17.6
Median raphe nucleus
nTPM: 21.4
2220 Male, age 76, midline 21.4
Pedunculopontine tegmental nucleus
nTPM: 22.1
1921 Female, age 85, both hemispheres 23.6
2334 Male, age 80, both hemispheres 22.2
2338 Male, age 61, both hemispheres 20.6
Periaquaductal grey, anterior
nTPM: 22.6
1947 Male, age 18, unknown 25.3
2502 Female, age 75, unknown 22.4
1795 Male, age 51, unknown 20.1
Periaquaductal grey, dorsal
nTPM: 20.4
1840 Male, age 53, unknown 21.4
1831 Male, age 72, unknown 21.3
2464 Female, age 72, unknown 20.0
2850 Male, age 76, both hemispheres 19.1
Periaquaductal grey, lateral
nTPM: 20.0
2053 Male, age 18, unknown 21.5
2272 Male, age 74, both hemispheres 19.7
2140 Male, age 76, both hemispheres 18.9
Pretectal area
nTPM: 22.7
2007 Male, age 72, unknown 26.5
1944 Female, age 72, unknown 25.4
1816 Male, age 51, unknown 25.1
1815 Male, age 53, unknown 23.9
1817 Female, age 42, unknown 23.8
2667 Female, age 75, unknown 23.8
2407 Male, age 75, both hemispheres 22.0
2316 Male, age 76, right hemisphere 21.5
2273 Male, age 74, both hemispheres 20.3
2224 Female, age 72, unknown 19.6
2825 Male, age 18, unknown 17.8
Red nucleus
nTPM: 23.5
1821 Female, age 72, unknown 26.7
1904 Male, age 53, unknown 26.0
1865 Male, age 51, unknown 25.3
2725 Female, age 75, unknown 24.9
2785 Male, age 18, unknown 24.6
1954 Female, age 42, unknown 23.8
2823 Male, age 76, right hemisphere 22.9
2503 Female, age 72, unknown 22.6
2769 Male, age 72, unknown 21.8
2227 Male, age 72, unknown 21.7
2584 Male, age 75, left hemisphere 20.9
2588 Male, age 74, left hemisphere 20.6
Substantia nigra
nTPM: 23.9
2409 Female, age 72, unknown 27.3
2241 Male, age 72, unknown 27.1
1916 Female, age 42, unknown 26.0
1851 Male, age 51, unknown 25.9
1889 Female, age 72, unknown 25.1
2583 Male, age 75, right hemisphere 23.6
2590 Female, age 75, unknown 22.2
2665 Male, age 74, both hemispheres 21.5
1941 Male, age 53, unknown 21.2
2699 Male, age 18, unknown 18.8
Superior colliculus
nTPM: 21.7
1913 Female, age 42, unknown 24.2
2261 Male, age 18, unknown 23.8
1995 Male, age 72, unknown 22.7
2087 Female, age 72, unknown 22.7
1895 Male, age 76, right hemisphere 21.8
1796 Male, age 53, unknown 21.5
2587 Male, age 74, left hemisphere 21.4
2668 Female, age 75, unknown 20.5
1839 Male, age 51, unknown 20.1
2664 Male, age 75, both hemispheres 18.4
Ventral tegmental area
nTPM: 22.5
2410 Female, age 72, unknown 26.6
2223 Female, age 72, unknown 23.3
2218 Male, age 76, both hemispheres 22.7
1915 Female, age 42, unknown 22.5
1942 Male, age 51, unknown 20.8
2021 Male, age 53, unknown 19.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 139

Max nTPM: 42.5
Min nTPM: 11.4
Std nTPM: 6.2
Median nTPM: 23.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 40.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 39.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 36.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 36.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 35.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 35.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 34.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.1
FF:10158-103A5 76 years, female 61.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.0
Pig sample Sample description nTPM
Midbrain
nTPM: 46.4
Samples: 4

Max nTPM: 55.8
Min nTPM: 40.2
Sample A Female 40.8
Sample B Female 40.2
Sample C Male 55.8
Sample D Male 48.6
Periaqueductal gray
nTPM: 34.4
Samples: 3

Max nTPM: 37.7
Min nTPM: 30.6
Sample B Female 30.6
Sample C Male 37.7
Sample D Male 35.0
Substantia nigra
nTPM: 40.2
Samples: 4

Max nTPM: 51.2
Min nTPM: 28.3
Sample A Female 51.2
Sample B Female 37.7
Sample C Male 43.4
Sample D Male 28.3
Superior colliculi
nTPM: 50.0
Samples: 4

Max nTPM: 60.1
Min nTPM: 38.9
Sample A Female 53.9
Sample B Female 38.9
Sample C Male 60.1
Sample D Male 46.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 38.5
Min nTPM: 29.3
Sample A Male 34.3
Sample B Male 31.2
Sample C Female 29.3
Sample D Female 38.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70919621 Antisense, RP_050713_01_F12, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.