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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:39.3 nTPM
HPA:39.3 nTPM
GTEx:78.2 nTPM
FANTOM5:55.4 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:26.3 nTPM
Allen mouse:7.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034739
Glial cells Medium
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.3
Sample id Sample description nTPM
Hippocampus
nTPM: 35.9
2621 Female, age 67, right hemisphere 38.3
2529 Female, age 94, left hemisphere 37.8
1911 Female, age 85, right hemisphere 35.5
1898 Male, age 80, left hemisphere 34.7
1855 Male, age 76, left hemisphere 34.6
2148 Female, age 91, left hemisphere 34.6
Dentate gyrus
nTPM: 36.6
2531 Female, age 67, both hemispheres 41.3
2530 Female, age 94, left hemisphere 39.9
2010 Male, age 76, both hemispheres 39.0
2528 Male, age 74, both hemispheres 33.9
1927 Female, age 91, both hemispheres 32.9
2246 Female, age 85, both hemispheres 32.8
Entorhinal gyrus
nTPM: 39.3
2613 Female, age 94, left hemisphere 44.7
2764 Male, age 80, right hemisphere 41.0
2117 Female, age 91, right hemisphere 38.1
1938 Female, age 85, left hemisphere 37.9
1787 Male, age 76, left hemisphere 37.7
2686 Male, age 75, right hemisphere 35.9
Hippocampus, CA1
nTPM: 35.3
2045 Male, age 76, both hemispheres 39.2
2749 Male, age 80, left hemisphere 38.4
1873 Female, age 85, both hemispheres 35.0
2527 Male, age 74, both hemispheres 32.9
2082 Female, age 91, right hemisphere 31.1
Hippocampus, CA2
nTPM: 32.4
2437 Female, age 94, left hemisphere 37.1
1963 Male, age 80, left hemisphere 33.1
1892 Male, age 76, both hemispheres 32.5
2249 Male, age 74, both hemispheres 32.0
2113 Female, age 91, right hemisphere 31.7
1940 Female, age 85, left hemisphere 28.2
Hippocampus, CA3
nTPM: 39.3
2620 Female, age 94, left hemisphere 56.0
2861 Female, age 67, both hemispheres 50.4
2137 Male, age 80, left hemisphere 35.8
1867 Male, age 76, both hemispheres 34.8
1891 Female, age 85, both hemispheres 33.0
2436 Male, age 74, both hemispheres 26.1
Parahippocampal cortex
nTPM: 34.5
2018 Male, age 76, both hemispheres 38.0
2245 Female, age 91, both hemispheres 37.7
2692 Male, age 74, both hemispheres 36.1
2250 Female, age 67, right hemisphere 35.2
2622 Female, age 67, right hemisphere 35.2
2532 Female, age 72, left hemisphere 34.6
1933 Female, age 85, both hemispheres 33.3
1990 Female, age 91, right hemisphere 32.5
2693 Female, age 94, both hemispheres 31.6
1850 Male, age 80, both hemispheres 31.0
Perirhinal gyrus
nTPM: 33.1
1794 Male, age 80, right hemisphere 38.3
1847 Female, age 91, left hemisphere 32.8
2521 Female, age 94, right hemisphere 31.7
2848 Male, age 76, right hemisphere 31.5
1841 Female, age 85, right hemisphere 31.3
Subiculum
nTPM: 33.8
2042 Male, age 76, both hemispheres 37.9
1901 Male, age 80, both hemispheres 35.1
1977 Female, age 85, both hemispheres 33.7
2619 Male, age 74, both hemispheres 33.0
2729 Female, age 91, right hemisphere 32.4
2438 Female, age 94, left hemisphere 30.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 78.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 78.2
Samples: 197

Max nTPM: 110.5
Min nTPM: 38.0
Std nTPM: 12.4
Median nTPM: 78.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 110.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 109.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 105.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 105.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 104.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 103.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 103.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 101.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 101.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 100.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 100.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.4
FF:10153-102I9 76 years, female 64.8
FF:10169-103B7 60 years, female 46.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 51.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 51.3
Samples: 4

Max nTPM: 63.5
Min nTPM: 41.0
Sample A Female 63.5
Sample B Female 49.9
Sample C Male 50.7
Sample D Male 41.0
Entorhinal cortex
nTPM: 44.5
Samples: 4

Max nTPM: 54.0
Min nTPM: 38.0
Sample A Female 54.0
Sample B Female 38.0
Sample C Male 44.2
Sample D Male 41.8
Subiculum
nTPM: 47.6
Samples: 4

Max nTPM: 59.4
Min nTPM: 41.5
Sample A Female 59.4
Sample B Female 43.9
Sample C Male 45.6
Sample D Male 41.5
Ventral hippocampus
nTPM: 50.4
Samples: 4

Max nTPM: 62.0
Min nTPM: 36.5
Sample A Female 51.5
Sample B Female 36.5
Sample C Male 62.0
Sample D Male 51.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.2
Samples: 4

Max nTPM: 25.2
Min nTPM: 22.6
Sample A Male 25.2
Sample B Male 24.2
Sample C Female 22.6
Sample D Female 24.9
Hippocampal formation
nTPM: 26.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 21.9
Sample A Male 21.9
Sample B Male 29.8
Sample C Female 27.3
Sample D Female 26.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.8
69735747 Antisense, RP_050503_03_D12, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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