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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:62.6 nTPM
HPA:62.6 nTPM
GTEx:47.8 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:4.4 nTPM
Allen mouse:9.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038878Antibody HPA038879Antibody CAB034211
Glial cells Not detectedLowNot detected
Neuronal cells Not detectedMediumMedium






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 62.6
Sample id Sample description nTPM
Hippocampus
nTPM: 57.8
2529 Female, age 94, left hemisphere 61.5
1911 Female, age 85, right hemisphere 60.4
2621 Female, age 67, right hemisphere 58.3
2148 Female, age 91, left hemisphere 56.7
1855 Male, age 76, left hemisphere 55.1
1898 Male, age 80, left hemisphere 54.9
Dentate gyrus
nTPM: 57.7
2530 Female, age 94, left hemisphere 60.4
2528 Male, age 74, both hemispheres 58.1
1927 Female, age 91, both hemispheres 57.9
2246 Female, age 85, both hemispheres 57.6
2531 Female, age 67, both hemispheres 57.5
2010 Male, age 76, both hemispheres 54.9
Entorhinal gyrus
nTPM: 59.8
2117 Female, age 91, right hemisphere 63.7
2686 Male, age 75, right hemisphere 62.2
2764 Male, age 80, right hemisphere 60.7
1938 Female, age 85, left hemisphere 59.6
2613 Female, age 94, left hemisphere 56.4
1787 Male, age 76, left hemisphere 56.3
Hippocampus, CA1
nTPM: 57.1
2082 Female, age 91, right hemisphere 61.2
2527 Male, age 74, both hemispheres 59.0
1873 Female, age 85, both hemispheres 56.2
2749 Male, age 80, left hemisphere 54.8
2045 Male, age 76, both hemispheres 54.4
Hippocampus, CA2
nTPM: 58.7
1940 Female, age 85, left hemisphere 64.2
2113 Female, age 91, right hemisphere 60.3
2249 Male, age 74, both hemispheres 59.2
2437 Female, age 94, left hemisphere 58.0
1963 Male, age 80, left hemisphere 56.4
1892 Male, age 76, both hemispheres 53.9
Hippocampus, CA3
nTPM: 56.2
1891 Female, age 85, both hemispheres 59.7
2436 Male, age 74, both hemispheres 59.0
2620 Female, age 94, left hemisphere 55.5
2861 Female, age 67, both hemispheres 55.0
1867 Male, age 76, both hemispheres 54.5
2137 Male, age 80, left hemisphere 53.5
Parahippocampal cortex
nTPM: 60.7
2532 Female, age 72, left hemisphere 64.6
1933 Female, age 85, both hemispheres 63.4
1850 Male, age 80, both hemispheres 61.7
2693 Female, age 94, both hemispheres 61.6
2245 Female, age 91, both hemispheres 60.7
2018 Male, age 76, both hemispheres 60.0
2250 Female, age 67, right hemisphere 60.0
1990 Female, age 91, right hemisphere 59.7
2692 Male, age 74, both hemispheres 58.7
2622 Female, age 67, right hemisphere 56.4
Perirhinal gyrus
nTPM: 62.6
1841 Female, age 85, right hemisphere 70.0
1794 Male, age 80, right hemisphere 62.8
2848 Male, age 76, right hemisphere 61.5
2521 Female, age 94, right hemisphere 61.4
1847 Female, age 91, left hemisphere 57.3
Subiculum
nTPM: 59.5
1977 Female, age 85, both hemispheres 61.1
2042 Male, age 76, both hemispheres 61.1
2729 Female, age 91, right hemisphere 60.0
1901 Male, age 80, both hemispheres 59.0
2619 Male, age 74, both hemispheres 58.0
2438 Female, age 94, left hemisphere 57.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.8
Samples: 197

Max nTPM: 106.6
Min nTPM: 20.3
Std nTPM: 12.4
Median nTPM: 46.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 106.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 95.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 82.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 79.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 77.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 77.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 75.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 72.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 69.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 69.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 68.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.7
FF:10153-102I9 76 years, female 65.8
FF:10169-103B7 60 years, female 37.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 20.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 19.3
Sample A Female 19.3
Sample B Female 20.2
Sample C Male 22.6
Sample D Male 20.9
Entorhinal cortex
nTPM: 21.6
Samples: 4

Max nTPM: 22.5
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 21.5
Sample C Male 22.5
Sample D Male 21.4
Subiculum
nTPM: 23.0
Samples: 4

Max nTPM: 24.5
Min nTPM: 22.0
Sample A Female 22.5
Sample B Female 24.5
Sample C Male 22.9
Sample D Male 22.0
Ventral hippocampus
nTPM: 21.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 19.5
Sample A Female 19.5
Sample B Female 21.6
Sample C Male 21.2
Sample D Male 22.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.5
Sample A Male 3.5
Sample B Male 4.0
Sample C Female 3.6
Sample D Female 3.8
Hippocampal formation
nTPM: 4.4
Samples: 4

Max nTPM: 4.5
Min nTPM: 4.0
Sample A Male 4.5
Sample B Male 4.4
Sample C Female 4.5
Sample D Female 4.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.8
2027 Antisense, RP_040420_01_A12, Mouse strain C57BL/6J (56 days, male) 9.8
2028 Antisense, RP_040420_01_A12, Mouse strain C57BL/6J (56 days, male) 9.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.