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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:61.3 nTPM
HPA:61.3 nTPM
GTEx:55.8 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:33.7 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047117
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 61.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.9
2481 Female, age 94, left hemisphere 56.0
1854 Male, age 80, left hemisphere 49.0
2289 Male, age 61, right hemisphere 46.7
2288 Male, age 75, left hemisphere 43.1
1781 Male, age 74, unknown 42.6
1857 Female, age 85, left hemisphere 42.6
2290 Female, age 72, unknown 41.8
2846 Female, age 79, unknown 37.0
Claustrum
nTPM: 39.5
2198 Male, age 80, both hemispheres 42.5
2491 Male, age 75, both hemispheres 41.3
2645 Female, age 72, unknown 40.0
1956 Male, age 74, unknown 39.4
2196 Female, age 79, unknown 39.3
2292 Female, age 85, both hemispheres 39.1
2284 Female, age 91, both hemispheres 38.5
2392 Female, age 94, both hemispheres 37.6
2568 Male, age 61, both hemispheres 37.6
Globus pallidus, externus
nTPM: 61.3
2646 Male, age 61, right hemisphere 71.5
1996 Male, age 80, right hemisphere 69.6
2567 Female, age 72, unknown 61.0
2772 Female, age 79, unknown 57.6
2395 Male, age 75, both hemispheres 46.7
Globus pallidus, internus
nTPM: 55.3
2037 Male, age 80, right hemisphere 62.0
1818 Male, age 74, unknown 59.6
2483 Female, age 94, right hemisphere 54.6
2566 Female, age 72, unknown 53.6
2111 Female, age 85, right hemisphere 53.5
2287 Male, age 75, right hemisphere 53.3
2778 Female, age 91, both hemispheres 50.2
Nucleus accumbens
nTPM: 43.0
1806 Female, age 85, left hemisphere 49.1
2732 Male, age 80, right hemisphere 47.3
2286 Male, age 75, left hemisphere 43.8
2391 Female, age 94, left hemisphere 43.8
2698 Female, age 72, unknown 43.0
2824 Male, age 61, right hemisphere 41.6
1783 Male, age 74, unknown 38.8
1856 Female, age 91, right hemisphere 36.5
Nucleus basalis of Meynert
nTPM: 47.5
2569 Male, age 61, both hemispheres 70.5
2484 Female, age 94, left hemisphere 42.9
2393 Male, age 80, right hemisphere 38.9
2821 Male, age 75, both hemispheres 37.7
Nucleus of the diagonal band
nTPM: 39.0
1979 Male, age 74, unknown 44.6
1812 Female, age 91, both hemispheres 41.1
2195 Female, age 85, both hemispheres 37.8
2775 Male, age 80, right hemisphere 36.4
2029 Male, age 61, right hemisphere 35.2
Olfactory tubercle
nTPM: 40.1
1846 Male, age 80, right hemisphere 42.4
2856 Male, age 75, right hemisphere 42.2
2487 Female, age 94, left hemisphere 39.8
1998 Female, age 91, both hemispheres 36.0
Putamen
nTPM: 42.7
2647 Male, age 75, left hemisphere 46.5
2482 Female, age 94, left hemisphere 46.1
1838 Male, age 80, right hemisphere 45.1
2489 Female, age 72, unknown 43.7
1829 Male, age 74, unknown 42.8
1937 Female, age 91, right hemisphere 37.6
2466 Female, age 79, unknown 37.0
Septal nuclei
nTPM: 42.1
2199 Male, age 80, right hemisphere 47.8
2394 Male, age 61, left hemisphere 46.2
2059 Female, age 85, both hemispheres 45.2
2009 Female, age 91, both hemispheres 41.1
2629 Female, age 94, right hemisphere 40.2
1960 Male, age 74, unknown 37.2
2031 Female, age 72, unknown 37.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.2
Samples: 246

Max nTPM: 146.7
Min nTPM: 11.7
Std nTPM: 21.5
Median nTPM: 47.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 146.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 132.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 129.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 116.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 116.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 109.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 105.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 104.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 98.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 95.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 94.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.6
Samples: 246

Max nTPM: 242.2
Min nTPM: 19.6
Std nTPM: 25.4
Median nTPM: 42.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 242.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 149.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 146.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 137.7
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 103.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 101.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 101.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 100.9
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 99.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 99.4
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 99.4
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Brain - Putamen (basal ganglia)
Average nTPM: 55.8
Samples: 205

Max nTPM: 164.1
Min nTPM: 12.7
Std nTPM: 24.7
Median nTPM: 50.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 164.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 129.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 129.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 123.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 118.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 117.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 116.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 116.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 115.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 109.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 109.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.8
FF:10164-103B2 76 years, female 35.8
Globus pallidus
Scaled Tags Per Million: 51.3
FF:10161-103A8 76 years, female 54.5
FF:10175-103C4 60 years, female 48.1
Nucleus accumbens
Scaled Tags Per Million: 26.4
FF:10037-101F1 23-56 years, mixed 26.4
Putamen
Scaled Tags Per Million: 41.9
FF:10176-103C5 60 years, female 41.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Caudate
nTPM: 12.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 12.5
Sample C Male 14.2
Sample D Male 12.5
Putamen
nTPM: 16.6
Samples: 4

Max nTPM: 23.1
Min nTPM: 11.4
Sample A Female 23.1
Sample B Female 11.4
Sample C Male 15.1
Sample D Male 16.7
Septum
nTPM: 16.2
Samples: 4

Max nTPM: 19.6
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 14.1
Sample C Male 19.6
Sample D Male 19.3
Ventral pallidum
nTPM: 17.1
Samples: 4

Max nTPM: 25.6
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 18.5
Sample C Male 25.6
Sample D Male 15.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.6
Samples: 4

Max nTPM: 29.9
Min nTPM: 27.4
Sample A Male 27.4
Sample B Male 29.9
Sample C Female 28.8
Sample D Female 28.4
Septum
nTPM: 33.7
Samples: 4

Max nTPM: 36.8
Min nTPM: 28.8
Sample A Male 28.8
Sample B Male 32.6
Sample C Female 36.7
Sample D Female 36.8
Ventral forebrain
nTPM: 32.5
Samples: 4

Max nTPM: 35.4
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 31.7
Sample C Female 35.4
Sample D Female 31.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
67881784 Antisense, RP_040923_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
67881784 Antisense, RP_040923_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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