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IGBP1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:34.9 nTPM
FANTOM5:60.1 Scaled Tags Per Million
Mouse:40.4 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000634Antibody HPA001004Antibody CAB034139
Glial cells -Not detectedLow
Neuronal cells MediumNot detectedLow







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.0
2288 Male, age 75, left hemisphere 40.1
2846 Female, age 79, unknown 39.6
2481 Female, age 94, left hemisphere 38.1
2290 Female, age 72, unknown 37.9
1857 Female, age 85, left hemisphere 37.7
1854 Male, age 80, left hemisphere 37.6
1781 Male, age 74, unknown 37.0
2289 Male, age 61, right hemisphere 36.0
Claustrum
nTPM: 37.1
2198 Male, age 80, both hemispheres 38.5
2392 Female, age 94, both hemispheres 38.4
2491 Male, age 75, both hemispheres 38.1
1956 Male, age 74, unknown 37.7
2196 Female, age 79, unknown 37.5
2292 Female, age 85, both hemispheres 37.1
2568 Male, age 61, both hemispheres 35.7
2284 Female, age 91, both hemispheres 35.6
2645 Female, age 72, unknown 35.1
Globus pallidus, externus
nTPM: 39.6
2395 Male, age 75, both hemispheres 44.0
2772 Female, age 79, unknown 41.5
1996 Male, age 80, right hemisphere 40.8
2567 Female, age 72, unknown 36.3
2646 Male, age 61, right hemisphere 35.4
Globus pallidus, internus
nTPM: 40.3
2287 Male, age 75, right hemisphere 45.3
2483 Female, age 94, right hemisphere 42.2
2778 Female, age 91, both hemispheres 41.0
1818 Male, age 74, unknown 39.8
2037 Male, age 80, right hemisphere 39.2
2111 Female, age 85, right hemisphere 38.5
2566 Female, age 72, unknown 36.1
Nucleus accumbens
nTPM: 38.3
2286 Male, age 75, left hemisphere 40.3
2391 Female, age 94, left hemisphere 40.2
2698 Female, age 72, unknown 38.9
1783 Male, age 74, unknown 38.0
1856 Female, age 91, right hemisphere 37.8
2824 Male, age 61, right hemisphere 37.6
1806 Female, age 85, left hemisphere 37.1
2732 Male, age 80, right hemisphere 36.6
Nucleus basalis of Meynert
nTPM: 38.0
2821 Male, age 75, both hemispheres 39.9
2484 Female, age 94, left hemisphere 38.2
2393 Male, age 80, right hemisphere 37.6
2569 Male, age 61, both hemispheres 36.3
Nucleus of the diagonal band
nTPM: 38.3
2775 Male, age 80, right hemisphere 39.9
1812 Female, age 91, both hemispheres 39.4
2029 Male, age 61, right hemisphere 38.3
2195 Female, age 85, both hemispheres 37.9
1979 Male, age 74, unknown 36.2
Olfactory tubercle
nTPM: 37.5
1846 Male, age 80, right hemisphere 39.4
1998 Female, age 91, both hemispheres 39.2
2487 Female, age 94, left hemisphere 35.8
2856 Male, age 75, right hemisphere 35.7
Putamen
nTPM: 37.7
2466 Female, age 79, unknown 39.6
2482 Female, age 94, left hemisphere 38.2
1829 Male, age 74, unknown 37.9
1838 Male, age 80, right hemisphere 37.9
2647 Male, age 75, left hemisphere 37.5
1937 Female, age 91, right hemisphere 36.8
2489 Female, age 72, unknown 35.8
Septal nuclei
nTPM: 37.6
2031 Female, age 72, unknown 41.3
1960 Male, age 74, unknown 39.2
2009 Female, age 91, both hemispheres 37.3
2629 Female, age 94, right hemisphere 36.9
2059 Female, age 85, both hemispheres 36.5
2394 Male, age 61, left hemisphere 36.0
2199 Male, age 80, right hemisphere 35.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 60.4
Min nTPM: 18.0
Std nTPM: 6.2
Median nTPM: 31.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 53.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 53.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 53.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 53.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 48.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 46.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 46.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 45.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 44.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.9
Samples: 246

Max nTPM: 61.1
Min nTPM: 19.3
Std nTPM: 6.2
Median nTPM: 34.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 61.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 56.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 52.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 52.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 48.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 47.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 47.9
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 47.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 47.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 46.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 46.9
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Brain - Putamen (basal ganglia)
Average nTPM: 32.9
Samples: 205

Max nTPM: 60.1
Min nTPM: 20.4
Std nTPM: 6.1
Median nTPM: 32.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 60.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 46.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 46.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 46.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 46.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 46.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 45.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 44.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 44.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 44.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 43.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.0
FF:10164-103B2 76 years, female 49.0
Globus pallidus
Scaled Tags Per Million: 44.7
FF:10161-103A8 76 years, female 50.0
FF:10175-103C4 60 years, female 39.4
Nucleus accumbens
Scaled Tags Per Million: 60.1
FF:10037-101F1 23-56 years, mixed 60.1
Putamen
Scaled Tags Per Million: 51.6
FF:10176-103C5 60 years, female 51.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.2
Samples: 4

Max nTPM: 43.5
Min nTPM: 38.8
Sample A Male 38.8
Sample B Male 39.4
Sample C Female 39.1
Sample D Female 43.5
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 40.5
Min nTPM: 30.5
Sample A Male 32.1
Sample B Male 38.8
Sample C Female 40.5
Sample D Female 30.5
Ventral forebrain
nTPM: 40.4
Samples: 4

Max nTPM: 42.1
Min nTPM: 39.6
Sample A Male 40.0
Sample B Male 39.9
Sample C Female 42.1
Sample D Female 39.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
100142501 Antisense, RP_110421_04_C06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
100142501 Antisense, RP_110421_04_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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