ABOUTMENU
HELP
NEWS
CDIP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:112.0 nTPM
FANTOM5:111.5 Scaled Tags Per Million
Pig:98.9 nTPM
Mouse:222.7 nTPM
Allen mouse:16.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.7
2828 Female, age 72, unknown 28.4
2586 Male, age 75, left hemisphere 26.4
1827 Male, age 72, unknown 22.4
2219 Male, age 76, both hemispheres 22.2
2411 Female, age 72, unknown 15.6
1833 Male, age 53, unknown 14.8
1870 Female, age 42, unknown 12.9
1830 Male, age 51, unknown 12.0
2019 Male, age 18, unknown 11.2
2666 Male, age 74, left hemisphere 11.2
Dorsal raphe nucleus
nTPM: 15.6
2047 Male, age 72, unknown 25.3
1828 Male, age 53, unknown 15.4
2750 Male, age 76, both hemispheres 15.3
2298 Female, age 72, unknown 15.0
2016 Female, age 72, unknown 7.3
Inferior colliculus
nTPM: 15.1
2849 Male, age 72, unknown 26.8
1848 Female, age 42, unknown 15.5
1890 Male, age 53, unknown 10.8
2097 Female, age 72, unknown 7.2
Median raphe nucleus
nTPM: 21.3
2220 Male, age 76, midline 21.3
Pedunculopontine tegmental nucleus
nTPM: 14.4
1921 Female, age 85, both hemispheres 18.8
2334 Male, age 80, both hemispheres 18.4
2338 Male, age 61, both hemispheres 6.0
Periaquaductal grey, anterior
nTPM: 20.6
1795 Male, age 51, unknown 24.0
2502 Female, age 75, unknown 22.9
1947 Male, age 18, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 13.3
1840 Male, age 53, unknown 18.5
2850 Male, age 76, both hemispheres 18.3
2464 Female, age 72, unknown 10.0
1831 Male, age 72, unknown 6.3
Periaquaductal grey, lateral
nTPM: 12.6
2053 Male, age 18, unknown 16.3
2140 Male, age 76, both hemispheres 12.4
2272 Male, age 74, both hemispheres 9.0
Pretectal area
nTPM: 20.7
1816 Male, age 51, unknown 28.2
2667 Female, age 75, unknown 27.2
2007 Male, age 72, unknown 26.7
1944 Female, age 72, unknown 25.6
1817 Female, age 42, unknown 23.3
1815 Male, age 53, unknown 21.6
2825 Male, age 18, unknown 17.7
2316 Male, age 76, right hemisphere 15.2
2224 Female, age 72, unknown 14.9
2273 Male, age 74, both hemispheres 14.4
2407 Male, age 75, both hemispheres 13.1
Red nucleus
nTPM: 12.9
2588 Male, age 74, left hemisphere 17.4
2725 Female, age 75, unknown 15.1
2785 Male, age 18, unknown 15.1
2823 Male, age 76, right hemisphere 14.7
2769 Male, age 72, unknown 14.5
2584 Male, age 75, left hemisphere 13.9
1954 Female, age 42, unknown 13.0
2503 Female, age 72, unknown 11.3
2227 Male, age 72, unknown 11.1
1821 Female, age 72, unknown 10.5
1904 Male, age 53, unknown 10.0
1865 Male, age 51, unknown 8.1
Substantia nigra
nTPM: 19.6
1916 Female, age 42, unknown 44.4
2699 Male, age 18, unknown 28.5
1889 Female, age 72, unknown 25.0
1851 Male, age 51, unknown 24.4
2583 Male, age 75, right hemisphere 17.4
1941 Male, age 53, unknown 16.2
2409 Female, age 72, unknown 15.6
2665 Male, age 74, both hemispheres 11.7
2241 Male, age 72, unknown 7.0
2590 Female, age 75, unknown 5.7
Superior colliculus
nTPM: 17.8
2664 Male, age 75, both hemispheres 29.2
1796 Male, age 53, unknown 28.7
2087 Female, age 72, unknown 21.8
2668 Female, age 75, unknown 21.4
2261 Male, age 18, unknown 16.3
1839 Male, age 51, unknown 15.9
1895 Male, age 76, right hemisphere 13.7
2587 Male, age 74, left hemisphere 13.3
1913 Female, age 42, unknown 9.2
1995 Male, age 72, unknown 8.2
Ventral tegmental area
nTPM: 20.5
1915 Female, age 42, unknown 30.1
2218 Male, age 76, both hemispheres 23.5
2410 Female, age 72, unknown 23.3
1942 Male, age 51, unknown 17.2
2021 Male, age 53, unknown 14.9
2223 Female, age 72, unknown 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.0
Samples: 139

Max nTPM: 236.4
Min nTPM: 41.0
Std nTPM: 38.0
Median nTPM: 107.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 236.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 208.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 205.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 195.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 191.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 189.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 182.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 181.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 177.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 174.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 174.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.5
FF:10158-103A5 76 years, female 111.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.9
Pig sample Sample description nTPM
Midbrain
nTPM: 95.1
Samples: 4

Max nTPM: 114.4
Min nTPM: 82.8
Sample A Female 84.7
Sample B Female 82.8
Sample C Male 114.4
Sample D Male 98.6
Periaqueductal gray
nTPM: 76.8
Samples: 3

Max nTPM: 87.8
Min nTPM: 64.8
Sample B Female 77.8
Sample C Male 87.8
Sample D Male 64.8
Substantia nigra
nTPM: 89.9
Samples: 4

Max nTPM: 116.3
Min nTPM: 62.2
Sample A Female 116.3
Sample B Female 65.8
Sample C Male 115.4
Sample D Male 62.2
Superior colliculi
nTPM: 98.9
Samples: 4

Max nTPM: 121.9
Min nTPM: 59.0
Sample A Female 121.9
Sample B Female 59.0
Sample C Male 116.0
Sample D Male 98.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 222.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 222.8
Samples: 4

Max nTPM: 228.7
Min nTPM: 219.9
Sample A Male 219.9
Sample B Male 219.9
Sample C Female 222.5
Sample D Female 228.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.2
413811 Antisense, RP_040809_01_F07, Mouse strain C57BL/6J (56 days, male) 16.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.