ABOUTMENU
HELP
NEWS
THPO
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:1.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:2.5 nTPM
Mouse:0.5 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.8
1781 Male, age 74, unknown 3.3
2289 Male, age 61, right hemisphere 3.0
1854 Male, age 80, left hemisphere 2.8
1857 Female, age 85, left hemisphere 2.7
2288 Male, age 75, left hemisphere 2.7
2846 Female, age 79, unknown 2.7
2290 Female, age 72, unknown 2.6
2481 Female, age 94, left hemisphere 2.5
Claustrum
nTPM: 3.7
2645 Female, age 72, unknown 4.7
1956 Male, age 74, unknown 4.1
2284 Female, age 91, both hemispheres 3.9
2491 Male, age 75, both hemispheres 3.7
2568 Male, age 61, both hemispheres 3.7
2196 Female, age 79, unknown 3.6
2198 Male, age 80, both hemispheres 3.4
2392 Female, age 94, both hemispheres 3.3
2292 Female, age 85, both hemispheres 3.1
Globus pallidus, externus
nTPM: 2.8
2646 Male, age 61, right hemisphere 3.0
1996 Male, age 80, right hemisphere 2.8
2567 Female, age 72, unknown 2.8
2395 Male, age 75, both hemispheres 2.7
2772 Female, age 79, unknown 2.7
Globus pallidus, internus
nTPM: 2.7
2566 Female, age 72, unknown 2.9
2287 Male, age 75, right hemisphere 2.7
1818 Male, age 74, unknown 2.6
2037 Male, age 80, right hemisphere 2.6
2111 Female, age 85, right hemisphere 2.6
2483 Female, age 94, right hemisphere 2.6
2778 Female, age 91, both hemispheres 2.6
Nucleus accumbens
nTPM: 2.9
1856 Female, age 91, right hemisphere 3.1
1783 Male, age 74, unknown 3.0
2824 Male, age 61, right hemisphere 3.0
1806 Female, age 85, left hemisphere 2.9
2286 Male, age 75, left hemisphere 2.8
2698 Female, age 72, unknown 2.8
2732 Male, age 80, right hemisphere 2.8
2391 Female, age 94, left hemisphere 2.6
Nucleus basalis of Meynert
nTPM: 2.8
2569 Male, age 61, both hemispheres 2.9
2393 Male, age 80, right hemisphere 2.8
2821 Male, age 75, both hemispheres 2.8
2484 Female, age 94, left hemisphere 2.6
Nucleus of the diagonal band
nTPM: 3.6
2195 Female, age 85, both hemispheres 4.1
2029 Male, age 61, right hemisphere 3.9
2775 Male, age 80, right hemisphere 3.9
1812 Female, age 91, both hemispheres 3.5
1979 Male, age 74, unknown 2.7
Olfactory tubercle
nTPM: 3.9
1998 Female, age 91, both hemispheres 4.2
2856 Male, age 75, right hemisphere 4.1
1846 Male, age 80, right hemisphere 4.0
2487 Female, age 94, left hemisphere 3.5
Putamen
nTPM: 2.9
2647 Male, age 75, left hemisphere 3.7
1838 Male, age 80, right hemisphere 3.0
1937 Female, age 91, right hemisphere 2.9
2489 Female, age 72, unknown 2.8
1829 Male, age 74, unknown 2.7
2466 Female, age 79, unknown 2.7
2482 Female, age 94, left hemisphere 2.6
Septal nuclei
nTPM: 3.6
1960 Male, age 74, unknown 4.0
2031 Female, age 72, unknown 4.0
2059 Female, age 85, both hemispheres 3.8
2009 Female, age 91, both hemispheres 3.5
2629 Female, age 94, right hemisphere 3.5
2199 Male, age 80, right hemisphere 3.1
2394 Male, age 61, left hemisphere 3.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.1
Samples: 246

Max nTPM: 4.8
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 1.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 4.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 3.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 3.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 3.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 3.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 2.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.7
Samples: 246

Max nTPM: 6.6
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 1.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 6.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 4.4
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 4.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 4.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 4.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 4.1
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 4.0
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 4.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 3.7
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 3.5
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 3.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 1.2
Samples: 205

Max nTPM: 3.5
Min nTPM: 0.1
Std nTPM: 0.6
Median nTPM: 1.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 3.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 3.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 3.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 3.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 3.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 2.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 2.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 2.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 2.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 2.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 2.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.5
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 3.1
Sample C Male 2.7
Sample D Male 2.1
Putamen
nTPM: 1.9
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.3
Sample A Female 1.9
Sample B Female 2.7
Sample C Male 1.3
Sample D Male 1.7
Septum
nTPM: 1.7
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.4
Sample A Female 1.5
Sample B Female 1.8
Sample C Male 1.4
Sample D Male 2.2
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 1.7
Sample C Male 1.9
Sample D Male 1.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 0.6
Sample C Female 0.8
Sample D Female 0.4
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.1
Sample C Female 0.5
Sample D Female 0.0
Ventral forebrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Male 0.6
Sample B Male 0.4
Sample C Female 0.3
Sample D Female 0.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
2671 Antisense, RP_040507_01_F02, Mouse strain C57BL/6J (56 days, male) 1.0
2672 Antisense, RP_040507_01_F02, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.6
2671 Antisense, RP_040507_01_F02, Mouse strain C57BL/6J (56 days, male) 0.6
2672 Antisense, RP_040507_01_F02, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.