ABOUTMENU
HELP
NEWS
GNPTG
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA:35.5 nTPM
GTEx:56.7 nTPM
FANTOM5:117.2 Scaled Tags Per Million
Pig:27.6 nTPM
Mouse:83.1 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.9
2828 Female, age 72, unknown 37.9
2586 Male, age 75, left hemisphere 37.7
1827 Male, age 72, unknown 36.3
1870 Female, age 42, unknown 35.5
1830 Male, age 51, unknown 34.9
2666 Male, age 74, left hemisphere 34.9
2411 Female, age 72, unknown 33.9
1833 Male, age 53, unknown 33.4
2019 Male, age 18, unknown 32.7
2219 Male, age 76, both hemispheres 31.6
Dorsal raphe nucleus
nTPM: 32.7
2750 Male, age 76, both hemispheres 35.1
2016 Female, age 72, unknown 32.3
1828 Male, age 53, unknown 32.2
2298 Female, age 72, unknown 32.2
2047 Male, age 72, unknown 31.7
Inferior colliculus
nTPM: 31.9
1890 Male, age 53, unknown 32.5
2849 Male, age 72, unknown 32.4
1848 Female, age 42, unknown 32.3
2097 Female, age 72, unknown 30.5
Median raphe nucleus
nTPM: 31.1
2220 Male, age 76, midline 31.1
Pedunculopontine tegmental nucleus
nTPM: 33.0
2334 Male, age 80, both hemispheres 34.7
1921 Female, age 85, both hemispheres 32.5
2338 Male, age 61, both hemispheres 31.9
Periaquaductal grey, anterior
nTPM: 34.2
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 34.4
2502 Female, age 75, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 30.9
2464 Female, age 72, unknown 32.5
2850 Male, age 76, both hemispheres 30.6
1840 Male, age 53, unknown 30.3
1831 Male, age 72, unknown 30.1
Periaquaductal grey, lateral
nTPM: 31.8
2272 Male, age 74, both hemispheres 32.6
2053 Male, age 18, unknown 32.5
2140 Male, age 76, both hemispheres 30.2
Pretectal area
nTPM: 33.3
2007 Male, age 72, unknown 35.3
1815 Male, age 53, unknown 34.9
1817 Female, age 42, unknown 34.4
1816 Male, age 51, unknown 34.1
2407 Male, age 75, both hemispheres 33.7
2273 Male, age 74, both hemispheres 33.5
2667 Female, age 75, unknown 33.4
1944 Female, age 72, unknown 33.1
2825 Male, age 18, unknown 31.9
2224 Female, age 72, unknown 31.1
2316 Male, age 76, right hemisphere 30.8
Red nucleus
nTPM: 35.5
1904 Male, age 53, unknown 38.5
1821 Female, age 72, unknown 37.7
2503 Female, age 72, unknown 37.6
2769 Male, age 72, unknown 37.0
1865 Male, age 51, unknown 36.2
2227 Male, age 72, unknown 35.9
2584 Male, age 75, left hemisphere 35.1
2823 Male, age 76, right hemisphere 34.4
1954 Female, age 42, unknown 34.0
2785 Male, age 18, unknown 34.0
2725 Female, age 75, unknown 33.3
2588 Male, age 74, left hemisphere 32.7
Substantia nigra
nTPM: 33.6
2583 Male, age 75, right hemisphere 37.0
2590 Female, age 75, unknown 35.7
1889 Female, age 72, unknown 35.2
2699 Male, age 18, unknown 35.0
1851 Male, age 51, unknown 34.2
1916 Female, age 42, unknown 33.8
2665 Male, age 74, both hemispheres 32.9
1941 Male, age 53, unknown 32.8
2409 Female, age 72, unknown 30.5
2241 Male, age 72, unknown 28.7
Superior colliculus
nTPM: 34.1
1913 Female, age 42, unknown 38.2
1995 Male, age 72, unknown 35.7
2261 Male, age 18, unknown 35.4
2668 Female, age 75, unknown 35.4
2087 Female, age 72, unknown 33.7
1895 Male, age 76, right hemisphere 33.5
1796 Male, age 53, unknown 33.0
2664 Male, age 75, both hemispheres 32.8
2587 Male, age 74, left hemisphere 32.5
1839 Male, age 51, unknown 30.3
Ventral tegmental area
nTPM: 33.5
2218 Male, age 76, both hemispheres 35.8
1942 Male, age 51, unknown 34.8
1915 Female, age 42, unknown 33.6
2410 Female, age 72, unknown 32.8
2021 Male, age 53, unknown 32.6
2223 Female, age 72, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.7
Samples: 139

Max nTPM: 94.0
Min nTPM: 33.8
Std nTPM: 10.3
Median nTPM: 56.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 94.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 91.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 76.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 76.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 75.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 71.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 71.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 70.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 70.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.2
FF:10158-103A5 76 years, female 117.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.6
Pig sample Sample description nTPM
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 41.8
Min nTPM: 18.6
Sample A Female 41.8
Sample B Female 21.3
Sample C Male 28.8
Sample D Male 18.6
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 19.0
Min nTPM: 16.4
Sample B Female 19.0
Sample C Male 17.2
Sample D Male 16.4
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 29.8
Min nTPM: 19.4
Sample A Female 28.4
Sample B Female 19.4
Sample C Male 21.7
Sample D Male 29.8
Superior colliculi
nTPM: 27.3
Samples: 4

Max nTPM: 29.4
Min nTPM: 24.0
Sample A Female 28.2
Sample B Female 24.0
Sample C Male 29.4
Sample D Male 27.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.1
Samples: 4

Max nTPM: 88.8
Min nTPM: 77.1
Sample A Male 88.8
Sample B Male 84.5
Sample C Female 77.1
Sample D Female 81.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
74357658 Antisense, RP_060119_03_B12, Mouse strain C57BL/6J (56 days, male) 4.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.