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GNPTG
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:50.4 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:80.3 nTPM
Allen mouse:8.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004055
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Hippocampus
nTPM: 32.3
2529 Female, age 94, left hemisphere 32.9
1898 Male, age 80, left hemisphere 32.8
1911 Female, age 85, right hemisphere 32.6
2621 Female, age 67, right hemisphere 32.5
2148 Female, age 91, left hemisphere 31.9
1855 Male, age 76, left hemisphere 31.1
Dentate gyrus
nTPM: 31.6
2530 Female, age 94, left hemisphere 36.7
2010 Male, age 76, both hemispheres 32.8
2246 Female, age 85, both hemispheres 31.9
2528 Male, age 74, both hemispheres 31.3
1927 Female, age 91, both hemispheres 28.9
2531 Female, age 67, both hemispheres 28.3
Entorhinal gyrus
nTPM: 32.6
2117 Female, age 91, right hemisphere 37.2
2764 Male, age 80, right hemisphere 34.1
1938 Female, age 85, left hemisphere 33.2
2613 Female, age 94, left hemisphere 31.8
2686 Male, age 75, right hemisphere 29.7
1787 Male, age 76, left hemisphere 29.6
Hippocampus, CA1
nTPM: 31.5
1873 Female, age 85, both hemispheres 33.6
2527 Male, age 74, both hemispheres 32.2
2749 Male, age 80, left hemisphere 31.7
2082 Female, age 91, right hemisphere 30.3
2045 Male, age 76, both hemispheres 29.8
Hippocampus, CA2
nTPM: 31.9
1963 Male, age 80, left hemisphere 35.4
1892 Male, age 76, both hemispheres 32.7
2249 Male, age 74, both hemispheres 32.7
1940 Female, age 85, left hemisphere 30.7
2437 Female, age 94, left hemisphere 30.4
2113 Female, age 91, right hemisphere 29.2
Hippocampus, CA3
nTPM: 31.6
2620 Female, age 94, left hemisphere 34.7
1867 Male, age 76, both hemispheres 33.7
1891 Female, age 85, both hemispheres 33.0
2436 Male, age 74, both hemispheres 30.1
2861 Female, age 67, both hemispheres 29.2
2137 Male, age 80, left hemisphere 29.1
Parahippocampal cortex
nTPM: 30.0
2692 Male, age 74, both hemispheres 32.9
2018 Male, age 76, both hemispheres 31.9
1990 Female, age 91, right hemisphere 31.5
1850 Male, age 80, both hemispheres 30.8
1933 Female, age 85, both hemispheres 30.6
2250 Female, age 67, right hemisphere 30.5
2532 Female, age 72, left hemisphere 30.1
2245 Female, age 91, both hemispheres 27.5
2693 Female, age 94, both hemispheres 27.3
2622 Female, age 67, right hemisphere 26.7
Perirhinal gyrus
nTPM: 29.8
1794 Male, age 80, right hemisphere 33.3
1847 Female, age 91, left hemisphere 30.2
2521 Female, age 94, right hemisphere 28.9
2848 Male, age 76, right hemisphere 28.4
1841 Female, age 85, right hemisphere 28.2
Subiculum
nTPM: 31.7
2042 Male, age 76, both hemispheres 33.5
1901 Male, age 80, both hemispheres 32.9
1977 Female, age 85, both hemispheres 32.3
2729 Female, age 91, right hemisphere 31.8
2619 Male, age 74, both hemispheres 30.8
2438 Female, age 94, left hemisphere 28.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 50.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.4
Samples: 197

Max nTPM: 89.7
Min nTPM: 20.0
Std nTPM: 10.7
Median nTPM: 49.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 89.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 80.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 77.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 75.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 74.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 73.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 72.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 71.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 70.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 68.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 67.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.2
FF:10153-102I9 76 years, female 83.1
FF:10169-103B7 60 years, female 75.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 21.8
Samples: 4

Max nTPM: 29.0
Min nTPM: 15.7
Sample A Female 29.0
Sample B Female 19.4
Sample C Male 22.9
Sample D Male 15.7
Entorhinal cortex
nTPM: 18.6
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.6
Sample A Female 19.5
Sample B Female 19.8
Sample C Male 18.6
Sample D Male 16.6
Subiculum
nTPM: 16.8
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.3
Sample A Female 20.3
Sample B Female 15.8
Sample C Male 15.9
Sample D Male 15.3
Ventral hippocampus
nTPM: 19.7
Samples: 4

Max nTPM: 23.2
Min nTPM: 14.3
Sample A Female 21.2
Sample B Female 14.3
Sample C Male 23.2
Sample D Male 20.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 80.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 80.3
Samples: 4

Max nTPM: 87.4
Min nTPM: 73.2
Sample A Male 77.4
Sample B Male 87.4
Sample C Female 83.1
Sample D Female 73.2
Hippocampal formation
nTPM: 78.5
Samples: 4

Max nTPM: 92.6
Min nTPM: 69.2
Sample A Male 92.6
Sample B Male 73.7
Sample C Female 69.2
Sample D Female 78.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
74357658 Antisense, RP_060119_03_B12, Mouse strain C57BL/6J (56 days, male) 8.7

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